Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 114 1e-20
seq655 82.4 7e-11
>seq10763
Length=10051
Score = 114 bits (126), Expect = 1e-20
Identities = 417/638 (65%), Gaps = 25/638 (4%)
Strand=Plus/Minus
Query 148250 CTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACCGGGACA 148309
||||||| || ||||| | || || || | |||||| ||| || || |||||
Sbjct 5031 CTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGGACA 4972
Query 148310 CTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTT---ACCCTCTTCATAAACAG 148366
|||| ||||||||| | || ||| | |||| ||||| || | |||||| || ||
Sbjct 4971 TTCGTTGGGGCACATGAGTGTCCAAT---CTCCGTTCTTTTCAACACGCTTCATGAAGAG 4915
Query 148367 ATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGGCACCCATATT 148426
||| || |||| | |||| ||| || ||||| || | ||||| || |||
Sbjct 4914 ATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGATT 4855
Query 148427 GCGCTTT---AGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGATGTATACGGT 148483
|||| ||||||||||| ||| || || || ||||| || || | ||| | ||
Sbjct 4854 ---CTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGC 4798
Query 148484 CATGGCGCCTTTCC---TTTTACCTCCTTGATCGACATGGCGTAGCA-TGCTATTAAAAA 148539
| || || | | ||||| ||||||||||||| | |||| | | || ||||
Sbjct 4797 GAATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATC-TAGCGGTATTGTTGAAAA 4739
Query 148540 CACGCAATGCAGGTCCCAATCCCGCCGCAGTTCCGTTTGTGGATTCAATTTTACTATTGG 148599
| || | ||| | | || | | |||| |||||| |||| | | |
Sbjct 4738 CTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAG 4679
Query 148600 TGGCGCGAATT-TGAGTGACATTCAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCA 148658
| || |||||| || | || || || || || || || | | ||||| |||||||||
Sbjct 4678 TAGCACGAATTCTGTG-GATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCA 4620
Query 148659 CAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGTTAAGCAGGTAG 148718
||| || | || | ||| || || | |||||| ||||| | |||| || ||| ||
Sbjct 4619 CAAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAG 4560
Query 148719 CACGATGACATTTGAGGCATTTTCATG--CCAGACGAAAATAGAGTTGGACTAGCGTGAG 148776
|| || || | ||| ||| || | || || | || || || |||||| |||||| |
Sbjct 4559 CATGAAGAAAGTTG-GGC-TTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTG 4502
Query 148777 TGAACAGCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTTTCGATGTCATCACCA 148835
| || |||| | ||| || | |||| ||| || ||||| ||||| ||||||||
Sbjct 4501 T-AAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG 4443
Query 148836 TGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGG 148873
||||| | || |||||||| | ||| ||||| ||
Sbjct 4442 TGAATACCAACGGCAACACGCATAATCATTTGTTGTGG 4405
>seq655
Length=7676
Score = 82.4 bits (90), Expect = 7e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852
|| ||||| | ||||| | || | ||||| ||||| ||||| | || ||
Sbjct 3901 ACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCGACAACGTTAAGACT 3842
Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912
|||||| || || || || || ||||| ||||| ||| | | || | || || |||
Sbjct 3841 AAGATTCAAGATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTGATCTTCGCTGGTAAA 3782
Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972
||||||||||||| | | | |||||| ||||| ||||| ||||| ||| |||||
Sbjct 3781 CAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCAAAAGGAATCGACTCTCCAT 3722
Query 26973 CTGGTCCTGAGACTTAGAGGAGG 26995
|||| || |||||| | || ||
Sbjct 3721 TTGGTTCTCAGACTTCGTGGTGG 3699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478591934911440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |