Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq10763 114 1e-20 seq655 82.4 7e-11 >seq10763 Length=10051 Score = 114 bits (126), Expect = 1e-20 Identities = 417/638 (65%), Gaps = 25/638 (4%) Strand=Plus/Minus Query 148250 CTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACCGGGACA 148309 ||||||| || ||||| | || || || | |||||| ||| || || ||||| Sbjct 5031 CTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGGACA 4972 Query 148310 CTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTT---ACCCTCTTCATAAACAG 148366 |||| ||||||||| | || ||| | |||| ||||| || | |||||| || || Sbjct 4971 TTCGTTGGGGCACATGAGTGTCCAAT---CTCCGTTCTTTTCAACACGCTTCATGAAGAG 4915 Query 148367 ATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGGCACCCATATT 148426 ||| || |||| | |||| ||| || ||||| || | ||||| || ||| Sbjct 4914 ATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGATT 4855 Query 148427 GCGCTTT---AGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGATGTATACGGT 148483 |||| ||||||||||| ||| || || || ||||| || || | ||| | || Sbjct 4854 ---CTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGC 4798 Query 148484 CATGGCGCCTTTCC---TTTTACCTCCTTGATCGACATGGCGTAGCA-TGCTATTAAAAA 148539 | || || | | ||||| ||||||||||||| | |||| | | || |||| Sbjct 4797 GAATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATC-TAGCGGTATTGTTGAAAA 4739 Query 148540 CACGCAATGCAGGTCCCAATCCCGCCGCAGTTCCGTTTGTGGATTCAATTTTACTATTGG 148599 | || | ||| | | || | | |||| |||||| |||| | | | Sbjct 4738 CTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAG 4679 Query 148600 TGGCGCGAATT-TGAGTGACATTCAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCA 148658 | || |||||| || | || || || || || || || | | ||||| ||||||||| Sbjct 4678 TAGCACGAATTCTGTG-GATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCA 4620 Query 148659 CAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGTTAAGCAGGTAG 148718 ||| || | || | ||| || || | |||||| ||||| | |||| || ||| || Sbjct 4619 CAAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAG 4560 Query 148719 CACGATGACATTTGAGGCATTTTCATG--CCAGACGAAAATAGAGTTGGACTAGCGTGAG 148776 || || || | ||| ||| || | || || | || || || |||||| |||||| | Sbjct 4559 CATGAAGAAAGTTG-GGC-TTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTG 4502 Query 148777 TGAACAGCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTTTCGATGTCATCACCA 148835 | || |||| | ||| || | |||| ||| || ||||| ||||| |||||||| Sbjct 4501 T-AAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG 4443 Query 148836 TGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGG 148873 ||||| | || |||||||| | ||| ||||| || Sbjct 4442 TGAATACCAACGGCAACACGCATAATCATTTGTTGTGG 4405 >seq655 Length=7676 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 || ||||| | ||||| | || | ||||| ||||| ||||| | || || Sbjct 3901 ACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCGACAACGTTAAGACT 3842 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 |||||| || || || || || ||||| ||||| ||| | | || | || || ||| Sbjct 3841 AAGATTCAAGATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTGATCTTCGCTGGTAAA 3782 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 ||||||||||||| | | | |||||| ||||| ||||| ||||| ||| ||||| Sbjct 3781 CAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCAAAAGGAATCGACTCTCCAT 3722 Query 26973 CTGGTCCTGAGACTTAGAGGAGG 26995 |||| || |||||| | || || Sbjct 3721 TTGGTTCTCAGACTTCGTGGTGG 3699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478591934911440