Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 295 2e-74
seq10338 116 1e-20
>seq10763
Length=10051
Score = 295 bits (326), Expect = 2e-74
Identities = 1158/1790 (65%), Gaps = 42/1790 (2%)
Strand=Plus/Plus
Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450
||||||| ||||| | |||| ||| ||||| || || |||| | ||| ||||
Sbjct 4342 TTCGGATTCAAGACTCTTGAGAGATCATACCTCCTCCGCCTCGATGGAAAAGTTGCTGAA 4401
Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510
|| || || || ||| | ||||||||||| ||||||| || | ||| | || |
Sbjct 4402 CGTCCACAACAAATGATTATGCGTGTTGCCGTTGGTATTCACGGTGATGATATCGAGAGC 4461
Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAACAA 363568
|| |||||||| || || ||| | || | | || || || ||||| | ||||||
Sbjct 4462 GCCATTGAAACCTACAA-CTTA-ATGTCCAACAAATACTTTACACACGCTTCTCCAACAC 4519
Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628
| | | || || || | | | || | ||||| ||||| || | | |||||||
Sbjct 4520 TCTTCTCCGCGGGTACACCACAAGCCCAACTTTCTTCATGCTTCCTCATTGACATGAAGG 4579
Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688
| ||| || || || || | ||| || | |||| |||||| | ||||| |||||||
Sbjct 4580 AGGATAGTATTGATGGAATTTATGATACTTTGAAGATTTGTGCCATGATTTCTAAGAATG 4639
Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAA-CAGTTACATTCGCGG 363746
| || || |||||| | ||||||| ||||||| || | || |||||| ||
Sbjct 4640 CTGGAGGTATTGGTCTCAACATCCACAGAATTCGTGCTACTGGTGCA--TACATTGCTGG 4697
Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806
|||| ||| | || || || | ||||| |||||||| || || ||||||| || ||
Sbjct 4698 CACAAATGGAAATTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAATACCGCTAG 4757
Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866
|| ||||| || ||||| |||||| || || || || || || || || ||
Sbjct 4758 ATATGTCGATCAAGGTGGTAACAAGCGCCCTGGTGCATTCGCCATCTACCTTGAACCATG 4817
Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926
||||| ||| | ||||||||| | || ||||| || || ||||| |||||| | ||
Sbjct 4818 GCATGCGGATGTCTTTGAGTTTTTGGATCTCCGAAAGAATCATGGAAAGGAGGAAGTTCG 4877
Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGC 363986
||||| || || || ||||| || ||| || | || | || |||||||| || ||
Sbjct 4878 AGCACGCGACCTCTTTTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAA- 4936
Query 363987 AGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGG 364045
|| || ||||| ||||| | ||||| |||||||||| || | | ||||| | |
Sbjct 4937 AGAACGGAGATTGGACACTCATGTGCCCCAACGAATGTCCTGGCTTGGCTGATGTCTATG 4996
Query 364046 GTGACGACTATGTTGCTCTATACGAAAAGTATGA-ATCGGAGGGAAAGGCTCGTAAGACA 364104
|||| || | || ||||| || || || || | ||| |||||| ||||||||
Sbjct 4997 GTGATGAGTTTGAAGCTCTTTATGAGGGTTACGAGAAACAAGGTAAAGGC-CGTAAGACT 5055
Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164
|| || || ||||| |||| | | ||| | || | |||| ||||||||||| ||||
Sbjct 5056 ATCAAGGCTCAAAAGCTTTGGTATTCTATCCTCGAGGCACAGACTGAGACAGGAA-ACCC 5114
Query 364165 TAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223
| | ||| | ||||||||| | |||||| ||| ||| || || | || || ||||
Sbjct 5115 TTTCATGCTTTACAAAGATGCTTGCAACAAAAAGAGCAATCAAAAGAATCTCGGCACAA- 5173
Query 364224 TCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282
|| |||| |||| | || || || || | |||||| | || || || ||| |||
Sbjct 5174 TCCGCAGCTCCAACTTGTGCACGGAAATCGTCGAATACTCTGCACCTGATGAGGTTGCTT 5233
Query 364283 TATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA------AGATGGTACTTTTG 364336
||||| | || || || || || || | ||||| || || || |||| ||
Sbjct 5234 GCTGTAATTTGGCTTCTATTGCTCTCCCAACCTTTGTCAACATGGCCGAGGGAACTTATG 5293
Query 364337 ACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGC--AATCTCG-ACAAGGTTA 364393
| ||| | ||| | || || | ||| | | | | || || | ||||| |||
Sbjct 5294 ATTTCCAAAAGCTTCACGAGGT---CGTTCAAGTTGTTGTCAGAAACTTGAACAAGATTA 5350
Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGA 364453
|||| | ||||| ||||| | |||||| | ||| | |||||||| || |
Sbjct 5351 TCGATATCAATTACTATCCCGTCGAAGAAGCCAGAAGAAGCAATTTCCGTCATCGACCTA 5410
Query 364454 TTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATT 364513
||| | ||||||| || || || ||||| | || || ||| | |||| ||||
Sbjct 5411 TTGCTGTTGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTCCGTTTACCATTCGATT 5470
Query 364514 CGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGA 364573
| || || || ||| || | | |||||||| || || || | || |||
Sbjct 5471 CACCCGAAGCGAAGCATCTCAACATCCAAATCTTTGAGACCATCTACCACGGTGCTTTGA 5530
Query 364574 CTGCTTCGTGT---GATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCC 364630
|| | || ||| || | | ||| | ||| | ||| | ||||| || || |
Sbjct 5531 CTTCATC-TGTTCAGA-TAGCCAAGGAATTAGGCCCA-TACGAGTCATATGAAGGATCTC 5587
Query 364631 CTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGA 364690
| | || |||| | | || | |||| | ||| ||| || || | | | |||
Sbjct 5588 CAGTCTCCAAGGGTGAGCTTCAATATGATATGTGGGGTGTTACTCCTACGGATCTTTGGG 5647
Query 364691 ACTGGGATACGCTACGTTCCAAC-GTTAAGAAGCATGGTACTCGCAA---CTCCCTCGTT 364746
| |||||| | || | | | | | ||| | ||||||| || || | || |||
Sbjct 5648 ATTGGGATTCTCT-CAAGCAATCTATCAAGCAACATGGTATCCGGAATAGTTTGCTTGTT 5706
Query 364747 ACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAA 364806
|| || ||||| || || || | || || ||||| ||| || || |||||
Sbjct 5707 ---GCTCCTATGCCAACTGCCAGCACATCTCAAATTCTCGGTTTCAATGAATGTTTCGAG 5763
Query 364807 CCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAAT 364866
|| | || ||| |||| |||||||| || | |||| || || | || |||||
Sbjct 5764 CCATACACTTCCAACATTTACTCACGCCGTGTGTTGGCCGGTGAGTTCCAAGTCGTTAAC 5823
Query 364867 AAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTAT 364926
| || | |||||| | |||| || || ||| ||| | ||||||||| |
Sbjct 5824 CCATGGCTTCTTAAGGATTTGGTCGACATGGGACTTTGGTCTGATAACATGAAGAATCGT 5883
Query 364927 ATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCT 364986
|||||||| | | |||||| | || || ||||| |||||| || | || ||
Sbjct 5884 ATCATCGCTGATGGTGGTTCCATTCAAAATATTCCCAACATTCCAGCCGAGATTAAAGCT 5943
Query 364987 ATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGC 365046
| ||||| ||||| |||||||| || |||| | || | ||||| || || ||
Sbjct 5944 CTCTACAAGACCGTTTGGGAAATCTCTCAACGAAACATTGTTCAAATGGCCGCAGACCGT 6003
Query 365047 GGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCC 365106
|||||||| || ||| || ||| | ||| | ||||| | || || | |
Sbjct 6004 GGTGCTTTCATTGATCAATCTCAATCGATGAACATTCACATGAAGGACCCTACAATGGGC 6063
Query 365107 AAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
||| | || |||||||||||| || ||||||| ||||| ||||| ||
Sbjct 6064 AAGATCACTTCCATGCATTTCGCTGGATGGAAATTGGGTCTCAAGACTGG 6113
>seq10338
Length=29807
Score = 116 bits (128), Expect = 1e-20
Identities = 344/526 (65%), Gaps = 12/526 (2%)
Strand=Plus/Plus
Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAA---CAATGAACGTTCATTCGCG 22488
|||||||| ||||| |||||||| | | |||||| | ||| ||| | |||| ||
Sbjct 12930 ATTAAGAAGAAGGCCGATTGGGCTGTTAGATGGATCCAAGACAAAGAATCTACATTTGCT 12989
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
||||||| | ||||| |||| |||||||| || ||||| ||| |||| |
Sbjct 12990 CAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGGTTCATTCGCCTCT 13049
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
||||| ||||| || || |||| | ||| | ||||| || || || || ||| | ||
Sbjct 13050 ATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTCCAACGAGCTCATC 13109
Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCT-ATATCGGAATCATATCAT 22667
||| || ||||||||||||||||| || || || | || | ||| | | | |||
Sbjct 13110 TCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTTCTCTTCTCGCACTTGAAGCAT 13169
Query 22668 TCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACG 22727
|| | | || | || | ||| | || ||| | || ||| | |||| |
Sbjct 13170 CGCCCAAGT----AAACAAGCCGTTCAGGATGTCATCACAGAGGCTGTTACAATTGAGCA 13225
Query 22728 TCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAG 22787
||| | ||| || | ||| |||| |||| || || | || ||||
Sbjct 13226 GGAATTCTTGACCGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGATCTGATGAA 13285
Query 22788 TACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTA 22847
||| ||| | || || ||||| ||||| | || | || ||| ||| |||| |
Sbjct 13286 ACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCCCTTGGTAATGAAAAG--GTT 13343
Query 22848 TAACGT--CGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAAT 22905
|| ||| | || ||||| || | |||||| ||||| || | || ||||||||
Sbjct 13344 TACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTTCTCTCGCTGGCAAGACCAAC 13403
Query 22906 TTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951
|||||||| || | |||| ||| ||||| || || ||||||||||
Sbjct 13404 TTCTTCGAGAAGCGTGTTGCTGATTACCAGAAGGCTGGTGTTATGG 13449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303156933309614
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