Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq10763 295 2e-74 seq10338 116 1e-20 >seq10763 Length=10051 Score = 295 bits (326), Expect = 2e-74 Identities = 1158/1790 (65%), Gaps = 42/1790 (2%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||||| ||||| | |||| ||| ||||| || || |||| | ||| |||| Sbjct 4342 TTCGGATTCAAGACTCTTGAGAGATCATACCTCCTCCGCCTCGATGGAAAAGTTGCTGAA 4401 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || || || ||| | ||||||||||| ||||||| || | ||| | || | Sbjct 4402 CGTCCACAACAAATGATTATGCGTGTTGCCGTTGGTATTCACGGTGATGATATCGAGAGC 4461 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAACAA 363568 || |||||||| || || ||| | || | | || || || ||||| | |||||| Sbjct 4462 GCCATTGAAACCTACAA-CTTA-ATGTCCAACAAATACTTTACACACGCTTCTCCAACAC 4519 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | | || || || | | | || | ||||| ||||| || | | ||||||| Sbjct 4520 TCTTCTCCGCGGGTACACCACAAGCCCAACTTTCTTCATGCTTCCTCATTGACATGAAGG 4579 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | ||| || || || || | ||| || | |||| |||||| | ||||| ||||||| Sbjct 4580 AGGATAGTATTGATGGAATTTATGATACTTTGAAGATTTGTGCCATGATTTCTAAGAATG 4639 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAA-CAGTTACATTCGCGG 363746 | || || |||||| | ||||||| ||||||| || | || |||||| || Sbjct 4640 CTGGAGGTATTGGTCTCAACATCCACAGAATTCGTGCTACTGGTGCA--TACATTGCTGG 4697 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 |||| ||| | || || || | ||||| |||||||| || || ||||||| || || Sbjct 4698 CACAAATGGAAATTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAATACCGCTAG 4757 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 || ||||| || ||||| |||||| || || || || || || || || || Sbjct 4758 ATATGTCGATCAAGGTGGTAACAAGCGCCCTGGTGCATTCGCCATCTACCTTGAACCATG 4817 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 ||||| ||| | ||||||||| | || ||||| || || ||||| |||||| | || Sbjct 4818 GCATGCGGATGTCTTTGAGTTTTTGGATCTCCGAAAGAATCATGGAAAGGAGGAAGTTCG 4877 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGC 363986 ||||| || || || ||||| || ||| || | || | || |||||||| || || Sbjct 4878 AGCACGCGACCTCTTTTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAA- 4936 Query 363987 AGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGG 364045 || || ||||| ||||| | ||||| |||||||||| || | | ||||| | | Sbjct 4937 AGAACGGAGATTGGACACTCATGTGCCCCAACGAATGTCCTGGCTTGGCTGATGTCTATG 4996 Query 364046 GTGACGACTATGTTGCTCTATACGAAAAGTATGA-ATCGGAGGGAAAGGCTCGTAAGACA 364104 |||| || | || ||||| || || || || | ||| |||||| |||||||| Sbjct 4997 GTGATGAGTTTGAAGCTCTTTATGAGGGTTACGAGAAACAAGGTAAAGGC-CGTAAGACT 5055 Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164 || || || ||||| |||| | | ||| | || | |||| ||||||||||| |||| Sbjct 5056 ATCAAGGCTCAAAAGCTTTGGTATTCTATCCTCGAGGCACAGACTGAGACAGGAA-ACCC 5114 Query 364165 TAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 | | ||| | ||||||||| | |||||| ||| ||| || || | || || |||| Sbjct 5115 TTTCATGCTTTACAAAGATGCTTGCAACAAAAAGAGCAATCAAAAGAATCTCGGCACAA- 5173 Query 364224 TCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282 || |||| |||| | || || || || | |||||| | || || || ||| ||| Sbjct 5174 TCCGCAGCTCCAACTTGTGCACGGAAATCGTCGAATACTCTGCACCTGATGAGGTTGCTT 5233 Query 364283 TATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA------AGATGGTACTTTTG 364336 ||||| | || || || || || || | ||||| || || || |||| || Sbjct 5234 GCTGTAATTTGGCTTCTATTGCTCTCCCAACCTTTGTCAACATGGCCGAGGGAACTTATG 5293 Query 364337 ACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGC--AATCTCG-ACAAGGTTA 364393 | ||| | ||| | || || | ||| | | | | || || | ||||| ||| Sbjct 5294 ATTTCCAAAAGCTTCACGAGGT---CGTTCAAGTTGTTGTCAGAAACTTGAACAAGATTA 5350 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGA 364453 |||| | ||||| ||||| | |||||| | ||| | |||||||| || | Sbjct 5351 TCGATATCAATTACTATCCCGTCGAAGAAGCCAGAAGAAGCAATTTCCGTCATCGACCTA 5410 Query 364454 TTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATT 364513 ||| | ||||||| || || || ||||| | || || ||| | |||| |||| Sbjct 5411 TTGCTGTTGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTCCGTTTACCATTCGATT 5470 Query 364514 CGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGA 364573 | || || || ||| || | | |||||||| || || || | || ||| Sbjct 5471 CACCCGAAGCGAAGCATCTCAACATCCAAATCTTTGAGACCATCTACCACGGTGCTTTGA 5530 Query 364574 CTGCTTCGTGT---GATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCC 364630 || | || ||| || | | ||| | ||| | ||| | ||||| || || | Sbjct 5531 CTTCATC-TGTTCAGA-TAGCCAAGGAATTAGGCCCA-TACGAGTCATATGAAGGATCTC 5587 Query 364631 CTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGA 364690 | | || |||| | | || | |||| | ||| ||| || || | | | ||| Sbjct 5588 CAGTCTCCAAGGGTGAGCTTCAATATGATATGTGGGGTGTTACTCCTACGGATCTTTGGG 5647 Query 364691 ACTGGGATACGCTACGTTCCAAC-GTTAAGAAGCATGGTACTCGCAA---CTCCCTCGTT 364746 | |||||| | || | | | | | ||| | ||||||| || || | || ||| Sbjct 5648 ATTGGGATTCTCT-CAAGCAATCTATCAAGCAACATGGTATCCGGAATAGTTTGCTTGTT 5706 Query 364747 ACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAA 364806 || || ||||| || || || | || || ||||| ||| || || ||||| Sbjct 5707 ---GCTCCTATGCCAACTGCCAGCACATCTCAAATTCTCGGTTTCAATGAATGTTTCGAG 5763 Query 364807 CCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAAT 364866 || | || ||| |||| |||||||| || | |||| || || | || ||||| Sbjct 5764 CCATACACTTCCAACATTTACTCACGCCGTGTGTTGGCCGGTGAGTTCCAAGTCGTTAAC 5823 Query 364867 AAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTAT 364926 | || | |||||| | |||| || || ||| ||| | ||||||||| | Sbjct 5824 CCATGGCTTCTTAAGGATTTGGTCGACATGGGACTTTGGTCTGATAACATGAAGAATCGT 5883 Query 364927 ATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCT 364986 |||||||| | | |||||| | || || ||||| |||||| || | || || Sbjct 5884 ATCATCGCTGATGGTGGTTCCATTCAAAATATTCCCAACATTCCAGCCGAGATTAAAGCT 5943 Query 364987 ATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGC 365046 | ||||| ||||| |||||||| || |||| | || | ||||| || || || Sbjct 5944 CTCTACAAGACCGTTTGGGAAATCTCTCAACGAAACATTGTTCAAATGGCCGCAGACCGT 6003 Query 365047 GGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCC 365106 |||||||| || ||| || ||| | ||| | ||||| | || || | | Sbjct 6004 GGTGCTTTCATTGATCAATCTCAATCGATGAACATTCACATGAAGGACCCTACAATGGGC 6063 Query 365107 AAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||| | || |||||||||||| || ||||||| ||||| ||||| || Sbjct 6064 AAGATCACTTCCATGCATTTCGCTGGATGGAAATTGGGTCTCAAGACTGG 6113 >seq10338 Length=29807 Score = 116 bits (128), Expect = 1e-20 Identities = 344/526 (65%), Gaps = 12/526 (2%) Strand=Plus/Plus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAA---CAATGAACGTTCATTCGCG 22488 |||||||| ||||| |||||||| | | |||||| | ||| ||| | |||| || Sbjct 12930 ATTAAGAAGAAGGCCGATTGGGCTGTTAGATGGATCCAAGACAAAGAATCTACATTTGCT 12989 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 ||||||| | ||||| |||| |||||||| || ||||| ||| |||| | Sbjct 12990 CAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGGTTCATTCGCCTCT 13049 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 ||||| ||||| || || |||| | ||| | ||||| || || || || ||| | || Sbjct 13050 ATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTCCAACGAGCTCATC 13109 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCT-ATATCGGAATCATATCAT 22667 ||| || ||||||||||||||||| || || || | || | ||| | | | ||| Sbjct 13110 TCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTTCTCTTCTCGCACTTGAAGCAT 13169 Query 22668 TCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACG 22727 || | | || | || | ||| | || ||| | || ||| | |||| | Sbjct 13170 CGCCCAAGT----AAACAAGCCGTTCAGGATGTCATCACAGAGGCTGTTACAATTGAGCA 13225 Query 22728 TCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAG 22787 ||| | ||| || | ||| |||| |||| || || | || |||| Sbjct 13226 GGAATTCTTGACCGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGATCTGATGAA 13285 Query 22788 TACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTA 22847 ||| ||| | || || ||||| ||||| | || | || ||| ||| |||| | Sbjct 13286 ACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCCCTTGGTAATGAAAAG--GTT 13343 Query 22848 TAACGT--CGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAAT 22905 || ||| | || ||||| || | |||||| ||||| || | || |||||||| Sbjct 13344 TACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTTCTCTCGCTGGCAAGACCAAC 13403 Query 22906 TTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 |||||||| || | |||| ||| ||||| || || |||||||||| Sbjct 13404 TTCTTCGAGAAGCGTGTTGCTGATTACCAGAAGGCTGGTGTTATGG 13449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303156933309614