Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 408 5e-109
seq10338 129 7e-25
>seq10763
Length=10051
Score = 408 bits (452), Expect = 5e-109
Identities = 1334/2061 (65%), Gaps = 41/2061 (2%)
Strand=Plus/Minus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
||||||||||| || || || || | | ||||| |||||||||||||| || || |||
Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969
|| | ||||||| |||||||| || | ||| | || || ||
Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 6042
Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029
|| || ||||| |||||| |||||| ||||| || || | |||||| ||||||| | |
Sbjct 6041 TGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACA 5982
Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089
|| | ||| | |||||||||| || || || | ||||| || |||||| |
Sbjct 5981 ATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAATG 5922
Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146
|| | |||| |||||||| |||||||| || || || | |||||| || | |||| |
Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862
Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206
|| | | | ||| ||| | |||| || || ||||| ||||| || || ||
Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802
Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266
| ||| || | || | |||||| || || || || || | | | ||||| ||
Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742
Query 62267 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62326
| |||||||| || ||||| |||||||| || || | |||||||| | | |||
Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACC- 5683
Query 62327 TATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62384
||||| |||| | || |||| ||||||| ||||||||||| || |||
Sbjct 5682 -ATGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACAC 5624
Query 62385 NNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCG 62440
||| || ||| || ||||| | ||||| |||||| |||
Sbjct 5623 CCCACATATCATATTGAAGCTCACCCTTGGAGACTGGAG----ATCCTTCATATGACTCG 5568
Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTCA-CAACTCGCCTCTAATGCACCGTAATAAATGGT 62499
||||| ||| | || |||| | | || | || || ||||||| || |||||
Sbjct 5567 TATGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAA-GCACCGTGGTAGATGGT 5509
Query 62500 TTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62559
|| ||||| | | || |||| | |||||| | ||| ||||| ||| ||||
Sbjct 5508 CTCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGG-TAAACGGAGAG 5450
Query 62560 AATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62618
| || || || || | ||||||||||||| | | ||||||| ||| | |||
Sbjct 5449 CCAAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGC 5390
Query 62619 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62678
|| |||||| | ||||| ||||| ||||| ||||| || || | |||||||
Sbjct 5389 TTCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGA 5330
Query 62679 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCCCATCTATT 62731
||| |||| || || || | || || | |||||| | ||| |||| | |
Sbjct 5329 CAACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGT-TG 5271
Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791
||||| | | |||| ||| |||| |||||| || ||||||| || | |
Sbjct 5270 ACAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCAGAG 5211
Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851
|||| | || || ||||| | || | ||| || || | ||| | ||||||
Sbjct 5210 TATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTG 5151
Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911
||||||||||| || ||||| || ||||| ||||| || | || || ||| |||| |
Sbjct 5150 CTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCC 5091
Query 62912 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-----TATAGATTTGTATCTCTTTT 62966
|| | || | | ||| | | ||||||| || || | || || || |||
Sbjct 5090 TCGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTT-TACCTTGTTT 5032
Query 62967 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAG 63026
||| ||| ||| | ||| ||||| || || | |||| ||| ||||
Sbjct 5031 CTC----GTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAG 4976
Query 63027 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63086
||||||| | || ||||| | | ||| ||||||| | | || || ||||| ||||
Sbjct 4975 GACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAGA 4916
Query 63087 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63146
|||| |||||||| || || ||| || || | | || | |||||| ||||| ||
Sbjct 4915 GATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGAT 4856
Query 63147 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63206
||||| ||||| | ||| | | | ||| | |||||| ||||| | ||| ||||| |
Sbjct 4855 TCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCGA 4796
Query 63207 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63266
| ||||| || ||||| || || ||||| | ||||||||||| || || ||||||
Sbjct 4795 ATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACTC 4736
Query 63267 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGG 63326
| ||| |||| ||||| || || | ||||| || || | || || ||| | |
Sbjct 4735 GAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTAG 4676
Query 63327 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63386
||||||| | || ||||| || || || || | ||||| || | || ||
Sbjct 4675 CACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAAA 4616
Query 63387 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 63446
|| || |||||||| || || || |||||||| ||| |||||| || || || ||
Sbjct 4615 TCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCATG 4556
Query 63447 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACC 63506
||| | |||| | || ||||| || | || ||||||||||| |||||
Sbjct 4555 AAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGT 4496
Query 63507 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATT 63565
|||| | || | || ||||| || ||||| || || ||||| || | |||||
Sbjct 4495 ATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGAATA 4437
Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625
|| || || |||||||| | ||| || || || | |||| | | || | |
Sbjct 4436 CCAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGGCGG 4377
Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685
| | ||| ||| | || | ||| || || || || || | ||| |||||||| |||
Sbjct 4376 AGGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATCG 4317
Query 63686 TAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT 63745
|||| ||| | ||||| |||| ||| || | | |||| |||| ||| | |||
Sbjct 4316 TAAACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTCCTT 4258
Query 63746 G-AAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCAT 63804
| ||| || ||| | | | | |||||||| | || |||| | ||| || ||
Sbjct 4257 GCTAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACTGAT 4198
Query 63805 CACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGC 63864
|| | ||| |||| || |||| ||||| ||||| || || || || | ||| ||
Sbjct 4197 GACATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGCAGC 4138
Query 63865 TAGAATGGCATAATCCGGATG 63885
|| ||||||||||| |||||
Sbjct 4137 TAAGATGGCATAATCGGGATG 4117
>seq10338
Length=29807
Score = 129 bits (142), Expect = 7e-25
Identities = 350/533 (66%), Gaps = 7/533 (1%)
Strand=Plus/Minus
Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416
|||||| || || ||||| ||| | ||||| || ||||| || || || || || |
Sbjct 13448 CATAACACCAGCCTTCTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 13389
Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476
| || || ||||||||||| |||||||| ||||| | |||| |||| | ||
Sbjct 13388 GAGAGAAATGTTTTCCATGAAGTCGAATGGGTTGGTGGAACGGTAAACCTTTTCATTACC 13329
Query 32477 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 32536
| || || | | |||||||| || || || ||| |||||||| || | ||
Sbjct 13328 AAGGGCAAGAAGAAGACGGTCTGCGACGAACTCAATGTATTGTTTCATCAGATCCGAGTT 13269
Query 32537 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 32596
||| || | || | ||||||||| | || | ||||| || ||||| | || ||
Sbjct 13268 CATGCCAAGGAGAGCACATGGAAGAGCTTCGGTCAAGAATTCCTGCTCAATTGTAACAGC 13209
Query 32597 GTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 32654
||||| || | | || | || | || || ||| || ||| | || || ||
Sbjct 13208 CTCTGTGATGACA--TCCTGAACGGCTTGTTTACTTGGGCGATGCTTCAAGTGCGAGAAG 13151
Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714
| | || ||||| ||| || ||||||||||| | || | |||||||| ||
Sbjct 13150 AGAAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAA 13091
Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 32774
|| || |||| ||| | |||||||| || ||||| || || || || ||||| |||
Sbjct 13090 GTAAGACCGGCCATCAAACCACGCTTCTTGAGCCAGAAGATAGAGGCGAATGAACCACTG 13031
Query 32775 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTG 32831
||||| || ||||| || || || || || | || | | || | | | ||
Sbjct 13030 AAGAAGATACCTTCAACAGCAGCGAATGCGACGAGACGTTGAGCAAATGTAGATTCTTTG 12971
Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 32884
|| || ||||| | |||||||||||||||||| || | |||||| | |||
Sbjct 12970 TCTTGGATCCATCTAACAGCCCAATCGGCCTTCTTCTTAATACAAGGGACTGT 12918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633538721449200
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