Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq655 118 9e-22 seq10174 96.9 3e-15 >seq655 Length=7676 Score = 118 bits (130), Expect = 9e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||||||||| || || | || || | |||||||| ||||| Sbjct 3470 AATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAATCGTC 3411 Query 25058 TGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || | || | ||| ||| ||| ||||| ||||| |||||||| || | Sbjct 3410 AGATACCATTGA-TAACGTAAAGACAAAGATCCAAGACAAGGAAGGTATTCCACCCGATC 3352 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || |||||||| || ||||| || || | | | ||| | ||||| | Sbjct 3351 AACAACGTTTGATCTTTGCCGGAAAGCAATTGGAGGACGGTAGAACTCTTTCGGATTATA 3292 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| || ||| ||||||| ||||| Sbjct 3291 ACATCCAAAAGGAGAGCACTTTACATTTGGTGCT 3258 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | |||||| | || || ||||||||| Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| ||||| | || | ||| || || || || || |||||||| || Sbjct 3637 GATACCATCGATAATGTGAAGACTAAGATTCA-AGATAAGGAGGGCATCCCACCTGATCA 3579 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | ||||| || || || || || || |||| ||||| | ||||||||| Sbjct 3578 GCAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACAA 3519 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| || ||||||| || || Sbjct 3518 CATCCAAAAGGAATCGACTTTACATTTGGTACT 3486 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064 ||| | || |||||| | ||||| || | ||||| | || || || || || |||||| Sbjct 3919 ATAGTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACT 3860 Query 25065 ATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123 ||||| | ||| | || | ||| || || || || || || ||||| || || || Sbjct 3859 ATCGACAACGTTAAGACTAAGATTCA-AGATAAGGAGGGTATCCCTCCTGATCAGCAACG 3801 Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183 | || || || || |||||| | ||||||| ||||| | ||| ||||| || || Sbjct 3800 TTTGATCTTCGCTGGTAAACAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCA 3741 Query 25184 AAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| ||||| || || ||||| || || || || Sbjct 3740 AAAGGAATCGACTCTCCATTTGGTTCTCAGACT 3708 >seq10174 Length=26070 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/189 (73%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 25003 AAATA--TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 ||||| || || ||||| ||||| ||||| ||||||| | || || || || || || Sbjct 24690 AAATAGCTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCGA 24631 Query 25061 CACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||| || || ||| | || | ||| ||||| || || ||||| || ||||| Sbjct 24630 CACTATCGA--CAATGTCAAGACCAAGATTCA-AGACAAGGAGGGAATTCCCCCGGACCA 24574 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || ||||| || ||| | ||||||| |||||| | |||||| || Sbjct 24573 ACAACGTTTGATCTTCGCCGGAAAGCAACTTGAAGATGGACGCACTCTATCCGATTATAA 24514 Query 25178 TATTCAAAA 25186 || ||||| Sbjct 24513 CATCCAAAA 24505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433265803484255