Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq655 118 9e-22
seq10174 96.9 3e-15
>seq655
Length=7676
Score = 118 bits (130), Expect = 9e-22
Identities = 156/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| ||||||||||| || || | || || | |||||||| |||||
Sbjct 3470 AATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAATCGTC 3411
Query 25058 TGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || || || | || | ||| ||| ||| ||||| ||||| |||||||| || |
Sbjct 3410 AGATACCATTGA-TAACGTAAAGACAAAGATCCAAGACAAGGAAGGTATTCCACCCGATC 3352
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| || | || |||||||| || ||||| || || | | | ||| | ||||| |
Sbjct 3351 AACAACGTTTGATCTTTGCCGGAAAGCAATTGGAGGACGGTAGAACTCTTTCGGATTATA 3292
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || ||||| || ||| ||||||| |||||
Sbjct 3291 ACATCCAAAAGGAGAGCACTTTACATTTGGTGCT 3258
Score = 98.7 bits (108), Expect = 9e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || | |||||| | || || |||||||||
Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || ||||| ||||| | || | ||| || || || || || |||||||| ||
Sbjct 3637 GATACCATCGATAATGTGAAGACTAAGATTCA-AGATAAGGAGGGCATCCCACCTGATCA 3579
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | ||||| || || || || || || |||| ||||| | |||||||||
Sbjct 3578 GCAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACAA 3519
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| ||||| || ||||||| || ||
Sbjct 3518 CATCCAAAAGGAATCGACTTTACATTTGGTACT 3486
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064
||| | || |||||| | ||||| || | ||||| | || || || || || ||||||
Sbjct 3919 ATAGTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACT 3860
Query 25065 ATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123
||||| | ||| | || | ||| || || || || || || ||||| || || ||
Sbjct 3859 ATCGACAACGTTAAGACTAAGATTCA-AGATAAGGAGGGTATCCCTCCTGATCAGCAACG 3801
Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183
| || || || || |||||| | ||||||| ||||| | ||| ||||| || ||
Sbjct 3800 TTTGATCTTCGCTGGTAAACAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCA 3741
Query 25184 AAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
||| ||||| || || ||||| || || || ||
Sbjct 3740 AAAGGAATCGACTCTCCATTTGGTTCTCAGACT 3708
>seq10174
Length=26070
Score = 96.9 bits (106), Expect = 3e-15
Identities = 138/189 (73%), Gaps = 8/189 (4%)
Strand=Plus/Minus
Query 25003 AAATA--TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060
||||| || || ||||| ||||| ||||| ||||||| | || || || || || ||
Sbjct 24690 AAATAGCTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCGA 24631
Query 25061 CACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||| || || ||| | || | ||| ||||| || || ||||| || |||||
Sbjct 24630 CACTATCGA--CAATGTCAAGACCAAGATTCA-AGACAAGGAGGGAATTCCCCCGGACCA 24574
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || || ||||| || ||| | ||||||| |||||| | |||||| ||
Sbjct 24573 ACAACGTTTGATCTTCGCCGGAAAGCAACTTGAAGATGGACGCACTCTATCCGATTATAA 24514
Query 25178 TATTCAAAA 25186
|| |||||
Sbjct 24513 CATCCAAAA 24505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433265803484255
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |