Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10338 120 3e-22 >seq10338 Length=29807 Score = 120 bits (132), Expect = 3e-22 Identities = 391/613 (64%), Gaps = 61/613 (10%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| || ||||||||||| | ||| ||||| || || || | ||| ||| ||| || | Sbjct 13145 GCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGTAAG 13086 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| | | || || || ||||||||||| || || || || || |||| || || Sbjct 13085 ACCGGCCATCAAACCACGCTTCTTGAGCCAGAAGATAGAGGCGAATGAACCACTGAAGAA 13026 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-C 93269 |||||||| || || || ||||| || | ||||| ||||| || || | || | Sbjct 13025 GATACCTTCAACAGCAGCGAATGCGACGAGACGTTGAGCAAA---TGTAGATTCTTTGTC 12969 Query 93270 T--GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAG-------GTAGTGTTT 93320 | ||||||| | | |||||||||||| || ||||||||||||| ||| || || Sbjct 12968 TTGGATCCATCTAACAGCCCAATCGGCCTTCTTCTTAATACAAGGGACTGTGTAATGATT 12909 Query 93321 CGATAGCGTT------------AAATAGGTA-ATCTCGCTCGTCCGAAT----------- 93356 || || || |||| || | ||| || || ||| Sbjct 12908 AGAAGGCATTCATACTTGTGATAAATGCATATAACTCACTGGTTTCAATAGCATTGAAGA 12849 Query 93357 ---------------CTCGT------ATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 || || |||||||||||||| | ||||| || |||| | Sbjct 12848 GATATGTTCGCTGAGCTTGTTCCTTGATGTATGTATCGATGAGAAGAGAGTATGTTTCCG 12789 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | || | |||||||| || ||||| |||||||| |||| ||||| | |||||| | Sbjct 12788 AGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGTGCTTCAGGGATCTGGA 12729 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 | || | || | || || || || |||||||| || ||||| ||||| || || | Sbjct 12728 CCTCACCACTGAAACGTTCGACAAGGTTCTCATTGACAATTCCATCAGATGCGGCGAAGA 12669 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCCAATCGG 93572 | || | | || | || | |||||| || || || || | ||| ||| Sbjct 12668 ATGCGAGGACGTGAGAGACGAAGTAACGCTCATCGTCATTGAGTCTGTTGTTCCAGTCGT 12609 Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 ||||| ||||| | |||| ||||| | ||||| || ||||| || || || |||| Sbjct 12608 GAAGATCCTTTGACAAGTCGATCTCTTCTGCGGTCCAGAAAGATGCCTCAGCCTTCTTGT 12549 Query 93633 ACATATCCCATAT 93645 |||| | ||| || Sbjct 12548 ACATCTGCCAAAT 12536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556778823129480