Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq10338 120 3e-22
>seq10338
Length=29807
Score = 120 bits (132), Expect = 3e-22
Identities = 391/613 (64%), Gaps = 61/613 (10%)
Strand=Plus/Minus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| || ||||||||||| | ||| ||||| || || || | ||| ||| ||| || |
Sbjct 13145 GCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGTAAG 13086
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210
||| | | || || || ||||||||||| || || || || || |||| || ||
Sbjct 13085 ACCGGCCATCAAACCACGCTTCTTGAGCCAGAAGATAGAGGCGAATGAACCACTGAAGAA 13026
Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-C 93269
|||||||| || || || ||||| || | ||||| ||||| || || | || |
Sbjct 13025 GATACCTTCAACAGCAGCGAATGCGACGAGACGTTGAGCAAA---TGTAGATTCTTTGTC 12969
Query 93270 T--GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAG-------GTAGTGTTT 93320
| ||||||| | | |||||||||||| || ||||||||||||| ||| || ||
Sbjct 12968 TTGGATCCATCTAACAGCCCAATCGGCCTTCTTCTTAATACAAGGGACTGTGTAATGATT 12909
Query 93321 CGATAGCGTT------------AAATAGGTA-ATCTCGCTCGTCCGAAT----------- 93356
|| || || |||| || | ||| || || |||
Sbjct 12908 AGAAGGCATTCATACTTGTGATAAATGCATATAACTCACTGGTTTCAATAGCATTGAAGA 12849
Query 93357 ---------------CTCGT------ATGTATGTATCGATTAACAGAGAATACATTTCAG 93395
|| || |||||||||||||| | ||||| || |||| |
Sbjct 12848 GATATGTTCGCTGAGCTTGTTCCTTGATGTATGTATCGATGAGAAGAGAGTATGTTTCCG 12789
Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455
| || | |||||||| || ||||| |||||||| |||| ||||| | |||||| |
Sbjct 12788 AGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGTGCTTCAGGGATCTGGA 12729
Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515
| || | || | || || || || |||||||| || ||||| ||||| || || |
Sbjct 12728 CCTCACCACTGAAACGTTCGACAAGGTTCTCATTGACAATTCCATCAGATGCGGCGAAGA 12669
Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG---CTTATCCCAATCGG 93572
| || | | || | || | |||||| || || || || | ||| |||
Sbjct 12668 ATGCGAGGACGTGAGAGACGAAGTAACGCTCATCGTCATTGAGTCTGTTGTTCCAGTCGT 12609
Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632
||||| ||||| | |||| ||||| | ||||| || ||||| || || || ||||
Sbjct 12608 GAAGATCCTTTGACAAGTCGATCTCTTCTGCGGTCCAGAAAGATGCCTCAGCCTTCTTGT 12549
Query 93633 ACATATCCCATAT 93645
|||| | ||| ||
Sbjct 12548 ACATCTGCCAAAT 12536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556778823129480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |