Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq655 129 5e-25
seq10174 111 1e-19
>seq655
Length=7676
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| |||||||| ||||| || || || || | || | ||||||||| | |
Sbjct 3469 ATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAATCGTCA 3410
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | | || ||| || ||||||||||| ||||||||||||||||||
Sbjct 3409 GATACCATTGATAACGTAAAGACAAAGATCCAAGACAAGGAAGGTATTCCACCCGATCAA 3350
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||| | || |||||||| || || || ||||| | || | || ||||| |||
Sbjct 3349 CAACGTTTGATCTTTGCCGGAAAGCAATTGGAGGACGGTAGAACTCTTTCGGATTATAAC 3290
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|| ||||| || ||| ||||||| ||
Sbjct 3289 ATCCAAAAGGAGAGCACTTTACATTTGGT 3261
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || |||| | || || || | |
Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || || | || || |||||||| |||||||| || ||||| |||||
Sbjct 3637 GATACCATCGATAATGTGAAGACTAAGATTCAAGATAAGGAGGGCATCCCACCTGATCAG 3578
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||||| || || || || || ||||| |||||| ||||||| | ||||||||||||
Sbjct 3577 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACAAC 3518
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|| ||||| ||||| || ||||||| ||
Sbjct 3517 ATCCAAAAGGAATCGACTTTACATTTGGT 3489
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290
|| || ||| | ||||| || || |||||||||| || ||| | | || || | |||
Sbjct 3913 GTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCGAC 3854
Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350
| | || || |||||||| ||||||||||| || || ||||| |||||| | ||
Sbjct 3853 AACGTTAAGACTAAGATTCAAGATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTGATC 3794
Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410
|| || || ||||| | || ||| |||||| | ||||| |||||||| ||||| |||
Sbjct 3793 TTCGCTGGTAAACAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCAAAAGGAA 3734
Query 22411 TCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || | ||||| ||| | || | || || |||
Sbjct 3733 TCGACTCTCCATTTGGTTCTCAGACTTCGTGGTGGT 3698
Score = 105 bits (116), Expect = 6e-18
Identities = 127/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| ||||| || ||| | |||| || | ||| || ||||
Sbjct 4186 ACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCGACACTATCGACAATGTCAAGACC 4127
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| || ||||||||||| || || || ||||| ||| | || ||||| |||||
Sbjct 4126 AAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAACAGCGTTTGATCTTTGCTGGCAAG 4067
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
|| | |||||| ||||||| | ||||| |||||||| || || || || ||
Sbjct 4066 CAACTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCTAC 4014
>seq10174
Length=26070
Score = 111 bits (122), Expect = 1e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287
|| || || || || || ||||| || |||| ||||| || ||| || |||| || |
Sbjct 24683 TTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCGACACTATC 24624
Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347
||| || |||| || ||||||||||||||||| ||||| || || ||||||||| |
Sbjct 24623 GACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTG 24564
Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || ||||| || || | || ||| ||||| | |||||||| ||||| |||||
Sbjct 24563 ATCTTCGCCGGAAAGCAACTTGAAGATGGACGCACTCTATCCGATTATAACATCCAAAA 24505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419667755522005
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |