Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq10338 98.7 2e-15 >seq10338 Length=29807 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||||| |||||||| || | |||||| | ||||| || ||| Sbjct 13432 TGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGAGAAATGTTTTCC 13373 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||| ||||| |||| | ||| ||| || ||||| || | ||||| | Sbjct 13372 ATGAAGTCGAATGGGTTGGTGGAACGGTAAACCTTTTCATTACCAAGGGCAA-GAAGAAG 13314 Query 251662 -CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACG 251720 |||||||| || ||||| | || ||| |||||| || ||||||||||||| | | Sbjct 13313 ACGGTCTGCGACGAACTCAATGTATTGTTTCATCAGATCCGAGTTCATGCCAAGGAGAGC 13254 Query 251721 ACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTC 251768 ||| |||| || || | |||||||| || | | ||| ||||| Sbjct 13253 ACATGGAAGAGCTTCGGTCAAGAATTCCTGCTCAATTGTAACAGCCTC 13206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027681706814457