Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq655 179 7e-40
seq10174 161 2e-34
seq9962 134 3e-26
seq10338 113 8e-20
seq2135 95.1 2e-14
>seq655
Length=7676
Score = 179 bits (198), Expect = 7e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
|||| || ||||| || | |||||| |||| || || || ||||||||||| |||||||
Sbjct 3469 TTCCACCACGAAGACGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGG 3528
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
| | || | ||||| || |||||||| || ||||| ||||| | ||| || || ||||
Sbjct 3529 ATAAGGTGCGGCCATCCTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTG 3588
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
| ||||| ||||| ||||||||||| | ||| || |||||||| || | || || |
Sbjct 3589 GGATGCCCTCCTTATCTTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGA 3648
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| || || ||||| || ||||| || |||||||||||||| ||||||||
Sbjct 3649 CCTCTAATGTGATTGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697
Score = 168 bits (186), Expect = 1e-36
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | ||||| |||| ||| ||| ||||||||||||||||| ||
Sbjct 3243 CCACCACGGAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAA 3302
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || || || || || || ||||| ||||| || || | | |||||| |||||||||
Sbjct 3303 AGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGA 3362
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| |||||||||||||| ||||||| ||| ||| || ||||| |||| ||||| |||
Sbjct 3363 ATACCTTCCTTGTCTTGGATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCACT 3422
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
||||| || || || ||||| || | ||||| || || || ||||||
Sbjct 3423 TCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3470
Score = 132 bits (146), Expect = 9e-26
Identities = 162/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| | | ||||| || || || || || ||||||||||| || |||||
Sbjct 3699 CCACCACGAAGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAA 3758
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| | |||||||| | || || || ||||| || | | ||| || || || ||
Sbjct 3759 AGTGTGCGGCCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGG 3818
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||||||||| | ||| ||| ||||| ||||| | ||||| ||
Sbjct 3819 ATACCCTCCTTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACC 3878
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455
|| | ||||| || ||||| || || |||||||||| |||
Sbjct 3879 TCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGACTAT 3919
>seq10174
Length=26070
Score = 161 bits (178), Expect = 2e-34
Identities = 143/179 (80%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|||||||||||||||||||| || || | |||||||| | ||||| |||||||| ||
Sbjct 24505 TTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATC 24564
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| | ||||||||| || ||||| || ||||||||||||||||| | |||||| |||
Sbjct 24565 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 24624
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| ||||| | ||||| || || | ||||||||| || ||||| | ||||||||||||
Sbjct 24625 ATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 24683
>seq9962
Length=55051
Score = 134 bits (148), Expect = 3e-26
Identities = 142/186 (76%), Gaps = 1/186 (1%)
Strand=Plus/Plus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|||| ||| ||| ||||||| |||||||| || || | || ||||| || || | |
Sbjct 10922 TGTAAGGTGCTCTCCTTTTGGAAATTATAATCTGAAAGAATTCTACCATCCTCCAA-TAC 10980
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || ||||| | || |||||||||||||||||| ||||||||||||| ||||||
Sbjct 10981 TTTCCTGCAAATATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGATCTTT 11040
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
| || ||| || ||||| |||| ||||| |||||||| || || || ||||| ||
Sbjct 11041 GTCTGGACATTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTC 11100
Query 68439 AGGGTC 68444
| ||||
Sbjct 11101 AAGGTC 11106
>seq10338
Length=29807
Score = 113 bits (124), Expect = 8e-20
Identities = 140/190 (74%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
||| || || ||||||||||| || | || || |||||||||||||| |||||| |
Sbjct 13448 CATAACACCAGCCTTCTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 13389
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGG--CGCCAAACTGCTTGGGGTAA 10052
||| |||||| ||||||||||| || ||||| || || |||| ||| | |
Sbjct 13388 GAGAGAAATGTTTTCCATGAAGTCGAATGGGTTGGTGGAACGGTAAAC--CTTTTCATTA 13331
Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112
|| || || | || ||||| || |||||||| ||||| || ||||||| ||||||
Sbjct 13330 CCAAGGGCAAGAAGAAGACGGTCTGCGACGAACTCAATGTATTGTTTCATCAGATCCGAG 13271
Query 10113 TTCATGCCAA 10122
||||||||||
Sbjct 13270 TTCATGCCAA 13261
>seq2135
Length=2596
Score = 95.1 bits (104), Expect = 2e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411
|| || || ||||| || || ||||| | ||||| ||||| ||||| | |||||
Sbjct 1 GGGATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTGTCGATAGTGTCGGAGGATTCA 60
Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || | |||||||||||| |||||||||||||||||||| ||||||||
Sbjct 61 ACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921486725662440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |