Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq10338 138 2e-27
seq5810 132 9e-26
seq10763 122 2e-22
>seq10338
Length=29807
Score = 138 bits (152), Expect = 2e-27
Identities = 350/519 (67%), Gaps = 15/519 (3%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCC-GACGCAAC 42691
|| || || ||||||||||| || ||||| | | |||||| | || | || | ||
Sbjct 12924 CCTTGTATTAAGAAGAAGGCCGATTGGGCTGTTAGATGGATCCA-AGACAAAGAATCTAC 12982
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|| | | | || || || || | || || || || ||||||||| || | ||
Sbjct 12983 ATTTGCTCAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGGTTCATT 13042
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811
|||||| ||||||||||||||| || | | |||| |||| || || ||||| |||||
Sbjct 13043 CGCCTCTATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTCCAACGA 13102
Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871
|||||| | | |||||||| || |||| ||||| |||||||| || |||||| ||
Sbjct 13103 GCTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTTCTCTTCTCG---CA 13159
Query 42872 CCTCAGGCACAAGCCCTCG--AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929
| | | ||| |||| | || ||| || | || ||||||| ||||| ||
Sbjct 13160 CTTGAAGCA-TCGCCCAAGTAAACAAGC-CGTTCAGGATGTCATCACAGAGGCTGTTACA 13217
Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGA 42988
|| ||| |||| ||| | || | | || || ||| | || | ||||||||| ||
Sbjct 13218 ATTGAGCAGGAATTCTTGACCGAAGCTCTTCCATGTG-CTCTCCTTGGCATGAACTCGGA 13276
Query 42989 CCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT--GTGCCAGATGGGTCTC 43046
|| ||| | ||||| ||| |||||| |||| ||| || |||| ||| |
Sbjct 13277 TCTGATGAAACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCC-CTTGGTAATG 13335
Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106
| | | ||| | | ||| |||||||| ||||| ||||| || | | |||
Sbjct 13336 AAAAG-GTTTACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTTCTCTCGCTGGC 13394
Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
||||||||||| ||||||||||| || || || ||||||
Sbjct 13395 AAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTACCAG 13433
>seq5810
Length=707
Score = 132 bits (146), Expect = 9e-26
Identities = 184/258 (71%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 244675 GAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAAT 244734
|||||||| | ||||||||||| || |||||||| || | | |||||| | ||
Sbjct 664 GAGGGCGAGGGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTGTACTCAATGAT 605
Query 244735 CTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTT 244794
||| ||||| |||||| || || || ||||||| || || || ||| |||
Sbjct 604 CTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCCTGTT 545
Query 244795 GCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCT 244854
|||||| |||||||||||||||||||| || |||||| |||||| |||| | |
Sbjct 544 GCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGAATGGC 485
Query 244855 GTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGT 244914
| |||||| | | |||||||| ||| |||| | ||||||| |||||| ||
Sbjct 484 ATACCAGAGTTTCTGAGCCTTGATGGTCTTGCGGCCACGGCCCTCTTGCTCGTACTTGGC 425
Query 244915 GTACAGGGCCTCGAACTC 244932
||| ||||| ||||||||
Sbjct 424 GTAAAGGGCATCGAACTC 407
>seq10763
Length=10051
Score = 122 bits (134), Expect = 2e-22
Identities = 467/726 (64%), Gaps = 18/726 (2%)
Strand=Plus/Minus
Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782
||| | ||| || || ||||| | ||| || ||| ||||| || | || |||||
Sbjct 5211 GTATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATT 5152
Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842
| ||| |||||| || || ||||| |||||||| || || ||||| ||| ||
Sbjct 5151 GCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGC 5092
Query 244843 GACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC 244902
|||||| | ||| || | |||||||| ||| | || | || || | |
Sbjct 5091 CTCGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTTTACCTTGTTT 5032
Query 244903 CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA 244962
|||||| | || || || || ||||| || |||| || | | ||| || ||
Sbjct 5031 CTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGGACA 4972
Query 244963 --CGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020
|| | ||||||||||| |||| || ||| | | || | || |||||||||
Sbjct 4971 TTCGTTG--GGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAGAGA 4914
Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTC--TGCTCGTCCGAGCCAGTGT 245078
|| || ||||||||||| | |||||||| | || ||| || ||| ||| |
Sbjct 4913 TCTGGAATCCAGAGGGCATAAAAGAGGTCGC--GTGCTCGAACTTCCTCCTTTCCATGAT 4856
Query 245079 TCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGA 245138
|||| | || |||||||| |||||||| || | ||||| || || | ||||| ||||
Sbjct 4855 TCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCGA 4796
Query 245139 GGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAG 245194
|| || || |||||||| || || || || | | | || |||| ||||||
Sbjct 4795 ATGCACCAGGGCGCTTGTTACCACCTTGATCGA----CATATCTAGCGGTATTGTTGAAA 4740
Query 245195 ATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCC 245254
| || || |||| || || |||||||| | || || ||||| ||||| || ||
Sbjct 4739 ACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCA 4680
Query 245255 TTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCG 245314
| | | | || |||| | || | || || || | ||| || || | |||
Sbjct 4679 GTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCA 4620
Query 245315 CAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAG 245374
|| |||| | || || || || || || || ||| |||||||| | || |||
Sbjct 4619 CAAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAG 4560
Query 245375 CAGGAGGACAGCTGGGGCTTG-GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGT 245433
|| || || || | ||||||| || | | || | ||| || || || ||||| ||
Sbjct 4559 CATGAAGAAAG-TTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGT 4501
Query 245434 AAAGTA 245439
||||||
Sbjct 4500 AAAGTA 4495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944200181465520
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