Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq10338 138 2e-27 seq5810 132 9e-26 seq10763 122 2e-22 >seq10338 Length=29807 Score = 138 bits (152), Expect = 2e-27 Identities = 350/519 (67%), Gaps = 15/519 (3%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCC-GACGCAAC 42691 || || || ||||||||||| || ||||| | | |||||| | || | || | || Sbjct 12924 CCTTGTATTAAGAAGAAGGCCGATTGGGCTGTTAGATGGATCCA-AGACAAAGAATCTAC 12982 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | | | || || || || | || || || || ||||||||| || | || Sbjct 12983 ATTTGCTCAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGGTTCATT 13042 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 |||||| ||||||||||||||| || | | |||| |||| || || ||||| ||||| Sbjct 13043 CGCCTCTATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTCCAACGA 13102 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 |||||| | | |||||||| || |||| ||||| |||||||| || |||||| || Sbjct 13103 GCTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTTCTCTTCTCG---CA 13159 Query 42872 CCTCAGGCACAAGCCCTCG--AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 | | | ||| |||| | || ||| || | || ||||||| ||||| || Sbjct 13160 CTTGAAGCA-TCGCCCAAGTAAACAAGC-CGTTCAGGATGTCATCACAGAGGCTGTTACA 13217 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGA 42988 || ||| |||| ||| | || | | || || ||| | || | ||||||||| || Sbjct 13218 ATTGAGCAGGAATTCTTGACCGAAGCTCTTCCATGTG-CTCTCCTTGGCATGAACTCGGA 13276 Query 42989 CCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT--GTGCCAGATGGGTCTC 43046 || ||| | ||||| ||| |||||| |||| ||| || |||| ||| | Sbjct 13277 TCTGATGAAACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCC-CTTGGTAATG 13335 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 | | | ||| | | ||| |||||||| ||||| ||||| || | | ||| Sbjct 13336 AAAAG-GTTTACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTTCTCTCGCTGGC 13394 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||| ||||||||||| || || || |||||| Sbjct 13395 AAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTACCAG 13433 >seq5810 Length=707 Score = 132 bits (146), Expect = 9e-26 Identities = 184/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 244675 GAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAAT 244734 |||||||| | ||||||||||| || |||||||| || | | |||||| | || Sbjct 664 GAGGGCGAGGGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTGTACTCAATGAT 605 Query 244735 CTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTT 244794 ||| ||||| |||||| || || || ||||||| || || || ||| ||| Sbjct 604 CTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCCTGTT 545 Query 244795 GCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCT 244854 |||||| |||||||||||||||||||| || |||||| |||||| |||| | | Sbjct 544 GCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGAATGGC 485 Query 244855 GTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGT 244914 | |||||| | | |||||||| ||| |||| | ||||||| |||||| || Sbjct 484 ATACCAGAGTTTCTGAGCCTTGATGGTCTTGCGGCCACGGCCCTCTTGCTCGTACTTGGC 425 Query 244915 GTACAGGGCCTCGAACTC 244932 ||| ||||| |||||||| Sbjct 424 GTAAAGGGCATCGAACTC 407 >seq10763 Length=10051 Score = 122 bits (134), Expect = 2e-22 Identities = 467/726 (64%), Gaps = 18/726 (2%) Strand=Plus/Minus Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||| | ||| || || ||||| | ||| || ||| ||||| || | || ||||| Sbjct 5211 GTATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATT 5152 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842 | ||| |||||| || || ||||| |||||||| || || ||||| ||| || Sbjct 5151 GCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGC 5092 Query 244843 GACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC 244902 |||||| | ||| || | |||||||| ||| | || | || || | | Sbjct 5091 CTCGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTTTACCTTGTTT 5032 Query 244903 CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA 244962 |||||| | || || || || ||||| || |||| || | | ||| || || Sbjct 5031 CTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGGACA 4972 Query 244963 --CGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020 || | ||||||||||| |||| || ||| | | || | || ||||||||| Sbjct 4971 TTCGTTG--GGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAGAGA 4914 Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTC--TGCTCGTCCGAGCCAGTGT 245078 || || ||||||||||| | |||||||| | || ||| || ||| ||| | Sbjct 4913 TCTGGAATCCAGAGGGCATAAAAGAGGTCGC--GTGCTCGAACTTCCTCCTTTCCATGAT 4856 Query 245079 TCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGA 245138 |||| | || |||||||| |||||||| || | ||||| || || | ||||| |||| Sbjct 4855 TCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCGA 4796 Query 245139 GGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAG 245194 || || || |||||||| || || || || | | | || |||| |||||| Sbjct 4795 ATGCACCAGGGCGCTTGTTACCACCTTGATCGA----CATATCTAGCGGTATTGTTGAAA 4740 Query 245195 ATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCC 245254 | || || |||| || || |||||||| | || || ||||| ||||| || || Sbjct 4739 ACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCA 4680 Query 245255 TTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCG 245314 | | | | || |||| | || | || || || | ||| || || | ||| Sbjct 4679 GTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCA 4620 Query 245315 CAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAG 245374 || |||| | || || || || || || || ||| |||||||| | || ||| Sbjct 4619 CAAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAG 4560 Query 245375 CAGGAGGACAGCTGGGGCTTG-GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGT 245433 || || || || | ||||||| || | | || | ||| || || || ||||| || Sbjct 4559 CATGAAGAAAG-TTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGT 4501 Query 245434 AAAGTA 245439 |||||| Sbjct 4500 AAAGTA 4495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944200181465520