Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq655 138 3e-27
seq10174 113 1e-19
seq10338 104 6e-17
seq2135 91.5 3e-13
>seq655
Length=7676
Score = 138 bits (152), Expect = 3e-27
Identities = 163/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| || || | ||| | || ||| |||||||| || |||||||
Sbjct 3699 CCACCACGAAGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAA 3758
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || ||||| | |||||| || |||||||||| ||| || ||| | |||
Sbjct 3759 AGTGTGCGGCCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGG 3818
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||| || || || | || ||||| || |||| || ||||| ||
Sbjct 3819 ATACCCTCCTTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACC 3878
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467
|| || ||||| ||||| ||||| ||||||||||||| |||
Sbjct 3879 TCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGACTAT 3919
Score = 118 bits (130), Expect = 3e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | |||||| | ||| | || ||| |||||||| || || ||||
Sbjct 3470 TCCACCACGAAGACGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGA 3529
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
| ||||| || || || || || || || ||||| || ||||| || ||| | |||
Sbjct 3530 TAAGGTGCGGCCATCCTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGG 3589
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
||| || || ||||| || || || | ||||| || || || | ||| ||| || ||
Sbjct 3590 GATGCCCTCCTTATCTTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGAC 3649
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | ||||| ||||| || || || ||||||||||| ||||||||
Sbjct 3650 CTCTAATGTGATTGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697
>seq10174
Length=26070
Score = 113 bits (124), Expect = 1e-19
Identities = 135/182 (74%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|||||||| ||||| |||| || |||||||| ||||| | ||| ||||| |||||||||
Sbjct 24505 TTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATC 24564
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
| ||| ||||| || ||| ||||| || || || || || || | || || ||
Sbjct 24565 AAACGTTGTTGG---TCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTG 24621
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| |||| ||| ||||| || || || ||||| ||||| || |||| |||||||||
Sbjct 24622 TCGATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACG 24681
Query 288463 AA 288464
||
Sbjct 24682 AA 24683
>seq10338
Length=29807
Score = 104 bits (114), Expect = 6e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157
|| || ||||||| || | || ||| | || ||| | |||||| || | | ||
Sbjct 13206 GAGGCTGTTACAATTGAGCAGGAATTCTTGACCGAAGCTCTTCCATGTGCTCTCCTTGGC 13265
Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTAT-CTTCACGGC 269216
||||| | ||||| ||||| ||||| || || ||||| || || ||| | |||| | |
Sbjct 13266 ATGAACTCGGATCTGATGAAACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCC 13325
Query 269217 ACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTC 269276
|| ||| |||| || || ||| ||| | || || |||| ||| |||||| |||||
Sbjct 13326 -CTTGGTAATGAAAAGGTTTACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTTC 13384
Query 269277 GCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGT 269312
|||| || ||||| ||||||||||| ||||||||
Sbjct 13385 TCTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGT 13420
>seq2135
Length=2596
Score = 91.5 bits (100), Expect = 3e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|||||||| || ||||||||||| || | ||| || || || |||| ||| |||||
Sbjct 1 GGGATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTGTCGATAGTGTCGGAGGATTCA 60
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| ||||| || || || || || ||||||||||| ||||||||
Sbjct 61 ACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179476398629806
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |