Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq655 138 3e-27 seq10174 113 1e-19 seq10338 104 6e-17 seq2135 91.5 3e-13 >seq655 Length=7676 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| || || | ||| | || ||| |||||||| || ||||||| Sbjct 3699 CCACCACGAAGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAA 3758 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | |||||| || |||||||||| ||| || ||| | ||| Sbjct 3759 AGTGTGCGGCCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGG 3818 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| || || || | || ||||| || |||| || ||||| || Sbjct 3819 ATACCCTCCTTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACC 3878 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467 || || ||||| ||||| ||||| ||||||||||||| ||| Sbjct 3879 TCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGACTAT 3919 Score = 118 bits (130), Expect = 3e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | |||||| | ||| | || ||| |||||||| || || |||| Sbjct 3470 TCCACCACGAAGACGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGA 3529 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || || || || || || || ||||| || ||||| || ||| | ||| Sbjct 3530 TAAGGTGCGGCCATCCTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGG 3589 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || ||||| || || || | ||||| || || || | ||| ||| || || Sbjct 3590 GATGCCCTCCTTATCTTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGAC 3649 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || || ||||||||||| |||||||| Sbjct 3650 CTCTAATGTGATTGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697 >seq10174 Length=26070 Score = 113 bits (124), Expect = 1e-19 Identities = 135/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| ||||| |||| || |||||||| ||||| | ||| ||||| ||||||||| Sbjct 24505 TTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATC 24564 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | ||| ||||| || ||| ||||| || || || || || || | || || || Sbjct 24565 AAACGTTGTTGG---TCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTG 24621 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| ||||| || || || ||||| ||||| || |||| ||||||||| Sbjct 24622 TCGATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACG 24681 Query 288463 AA 288464 || Sbjct 24682 AA 24683 >seq10338 Length=29807 Score = 104 bits (114), Expect = 6e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157 || || ||||||| || | || ||| | || ||| | |||||| || | | || Sbjct 13206 GAGGCTGTTACAATTGAGCAGGAATTCTTGACCGAAGCTCTTCCATGTGCTCTCCTTGGC 13265 Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTAT-CTTCACGGC 269216 ||||| | ||||| ||||| ||||| || || ||||| || || ||| | |||| | | Sbjct 13266 ATGAACTCGGATCTGATGAAACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCC 13325 Query 269217 ACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTC 269276 || ||| |||| || || ||| ||| | || || |||| ||| |||||| ||||| Sbjct 13326 -CTTGGTAATGAAAAGGTTTACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTTC 13384 Query 269277 GCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGT 269312 |||| || ||||| ||||||||||| |||||||| Sbjct 13385 TCTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGT 13420 >seq2135 Length=2596 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || ||||||||||| || | ||| || || || |||| ||| ||||| Sbjct 1 GGGATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTGTCGATAGTGTCGGAGGATTCA 60 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || || || || || ||||||||||| |||||||| Sbjct 61 ACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179476398629806