Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq10338 129 1e-24 seq767 100 6e-16 >seq10338 Length=29807 Score = 129 bits (142), Expect = 1e-24 Identities = 179/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562 |||||||||| || ||| || || |||||||| | ||| ||| ||||||| | Sbjct 13198 TCATCACAGAGGCTGTTACAATTGAGCAGGAATTCTTGACCGAAGCTCTTCCATGTGCTC 13257 Query 243563 TTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT 243622 | ||||||||||||| || || ||| ||| ||||| || ||||| || ||||| || Sbjct 13258 TCCTTGGCATGAACTCGGATCTGATGAAACAATACATTGAGTTCGTCGCAGACCGTCTTC 13317 Query 243623 TCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGC 243682 | | || |||||| |||| || || ||| |||| ||||| || | ||| ||||| Sbjct 13318 TTCTTGCCCTTGGTAATGAAAAGGTTTACCGTTCCACCAACCCATTCGACTTCATGGAAA 13377 Query 243683 TCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCC 243742 |||||| || || || || ||||||||||| |||||||| |||||| || Sbjct 13378 ACATTTCTCTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTACCAGAAGG 13437 Query 243743 CTGGTGTGATG 243753 ||||||| ||| Sbjct 13438 CTGGTGTTATG 13448 >seq767 Length=13821 Score = 100 bits (110), Expect = 6e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 334136 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAG 334195 |||||||||||| || ||| | |||| || | || | |||||| || |||| Sbjct 7956 GTCGAGATCGTGCTCTACGAACACAGTCTTGACCTCACTCTTCTTGGGGAAACCCTCAAC 8015 Query 334196 CTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAG 334255 || |||| ||||| ||||| ||||| || || || | ||||| || || || || Sbjct 8016 TTGCTCGTTGTTGATAGCACGCATGAGAGTAGACTTTCCGGAACCGTTAGGACCGCAAAG 8075 Query 334256 ACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACC 334315 |||||| || | ||||||||| ||| || | || | ||| |||||||| || |||| Sbjct 8076 ACCGTATCGTTGTCCACGCTTGAGACGGAGATGTGTTTGGTTGAGAAGAATCTTGGCACC 8135 Query 334316 ATATGCCAGAGAAAATTCACAATCACACAGATCCTCACCGACTTC 334360 |||||||| || ||| | || ||||||||||| ||||| Sbjct 8136 ATATGCCAAGTTGAAGGTACAGTTGCAAAGATCCTCACCAACTTC 8180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102713583334950