Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq10338 129 1e-24
seq767 100 6e-16
>seq10338
Length=29807
Score = 129 bits (142), Expect = 1e-24
Identities = 179/251 (71%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562
|||||||||| || ||| || || |||||||| | ||| ||| ||||||| |
Sbjct 13198 TCATCACAGAGGCTGTTACAATTGAGCAGGAATTCTTGACCGAAGCTCTTCCATGTGCTC 13257
Query 243563 TTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT 243622
| ||||||||||||| || || ||| ||| ||||| || ||||| || ||||| ||
Sbjct 13258 TCCTTGGCATGAACTCGGATCTGATGAAACAATACATTGAGTTCGTCGCAGACCGTCTTC 13317
Query 243623 TCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGC 243682
| | || |||||| |||| || || ||| |||| ||||| || | ||| |||||
Sbjct 13318 TTCTTGCCCTTGGTAATGAAAAGGTTTACCGTTCCACCAACCCATTCGACTTCATGGAAA 13377
Query 243683 TCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCC 243742
|||||| || || || || ||||||||||| |||||||| |||||| ||
Sbjct 13378 ACATTTCTCTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTACCAGAAGG 13437
Query 243743 CTGGTGTGATG 243753
||||||| |||
Sbjct 13438 CTGGTGTTATG 13448
>seq767
Length=13821
Score = 100 bits (110), Expect = 6e-16
Identities = 157/225 (70%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 334136 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAG 334195
|||||||||||| || ||| | |||| || | || | |||||| || ||||
Sbjct 7956 GTCGAGATCGTGCTCTACGAACACAGTCTTGACCTCACTCTTCTTGGGGAAACCCTCAAC 8015
Query 334196 CTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAG 334255
|| |||| ||||| ||||| ||||| || || || | ||||| || || || ||
Sbjct 8016 TTGCTCGTTGTTGATAGCACGCATGAGAGTAGACTTTCCGGAACCGTTAGGACCGCAAAG 8075
Query 334256 ACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACC 334315
|||||| || | ||||||||| ||| || | || | ||| |||||||| || ||||
Sbjct 8076 ACCGTATCGTTGTCCACGCTTGAGACGGAGATGTGTTTGGTTGAGAAGAATCTTGGCACC 8135
Query 334316 ATATGCCAGAGAAAATTCACAATCACACAGATCCTCACCGACTTC 334360
|||||||| || ||| | || ||||||||||| |||||
Sbjct 8136 ATATGCCAAGTTGAAGGTACAGTTGCAAAGATCCTCACCAACTTC 8180
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102713583334950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |