Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq10763 217 2e-51 seq5810 105 8e-18 seq10338 98.7 1e-15 >seq10763 Length=10051 Score = 217 bits (240), Expect = 2e-51 Identities = 930/1452 (64%), Gaps = 41/1452 (3%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||| |||||||| || |||||||| ||| ||||| || | |||||| || | Sbjct 6128 CGGAGATAGTACATTCCAGTCTTGAGACCCAATTTCCATCCAGCGAAATGCATGGAAGTG 6069 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | |||| | ||| || | |||| | |||||| ||| |||||||| ||||| Sbjct 6068 ATCTTGCCCATTGTAGGGTCCTTCATGTGAATGTTCATCGATTGAGATTGATCAATGAAA 6009 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTC 113774 ||||| || || ||||| | || || || ||| | || ||||||| || || Sbjct 6008 GCACCACGGTCTGCGGCCATTTGAA-CA-ATGTTTCGTTGAGAGATTTCCCAAACGGTCT 5951 Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCT 113834 ||||||| ||||| || |||| || | |||||||| ||||| ||||| | Sbjct 5950 TGTAGAGAGCTTTAATCTCGGCTGGAATGTTGGGAATATTTTGAATGGAACCACCATCAG 5891 Query 113835 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 113894 || || ||| |||||| | | ||||| || || || | | ||||| | | Sbjct 5890 CGATGATACGATTCTTCATGTTATCAGACCAAAGTCCCATGTCGACCAAATCCTTAAGAA 5831 Query 113895 G--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAGATAGATATTGG 113951 | ||| | | || || |||||||| || | || | | || || || |||| Sbjct 5830 GCCATGGGT--TAACGACTTGGAACTCACCGGCCAACACACGGCGTGAG-TAAATGTTGG 5774 Query 113952 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCA 114011 ||||||||||| || || |||||| ||| | ||||| | ||| ||| || |||| Sbjct 5773 AAGTGTATGGCTCGAAACATTCATTGAAACCGAGAATTTGAGATGTGCTGGCAGTTGGCA 5714 Query 114012 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGT 114071 | || || | || | || || |||| ||| | || | | || || |||||| | | Sbjct 5713 TAGGAGCAACAAGCAAACTATTCCGGATACCATGTTGCTTGATAGATTGCTTGAGAGAAT 5654 Query 114072 CCCAGTCGTAGTTGAGCTTT----GTCTCCCCCTGCCACATATCAAACTGGAGGATACCT 114127 |||| || | || | | || | ||| ||||||||| | || || ||| Sbjct 5653 CCCAATCCCAAA-GATCCGTAGGAGTAACACCC---CACATATCATATTGAAGCTCACCC 5598 Query 114128 TGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAG 114187 | |||| |||| ||||| ||| ||| |||||||||||| ||| || | || || Sbjct 5597 TTGGAGACTGGAGATCCTTCATATGACTCGTATGGGCCTAATTCCTTGGCTA--TCTGAA 5540 Query 114188 C---TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 114244 | | || | | | |||| || || |||||||| || | || | ||| Sbjct 5539 CAGATGAAGTCAAAG-CACCGTGGTAGATGGTCTCAAAGATTTGGATGTTGAGATGCTTC 5481 Query 114245 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 114304 || ||| ||||| || | | ||| | || |||| || |||||||| ||| Sbjct 5480 GCTTCGGGTGAATCGAATGGTAAACGGAGAGCCAAGAAGGCATCAGCAAGACCTTGAACA 5421 Query 114305 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAA 114364 || | |||| || ||||| | | ||| ||| || || |||||||| || Sbjct 5420 CCAACAGCAATAGGTCGATGACGGAAATTGCTTCTTCTGGCTTCTTCGACGGGATAGTAA 5361 Query 114365 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 114424 || ||||||||| | | || | ||| || ||||| | || || ||||||||| Sbjct 5360 TTGATATCGATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCGTGAAGCTTT 5301 Query 114425 TCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGCC 114481 | | ||||| || | | ||| | |||||| | | || || || || || ||| Sbjct 5300 TGGAAATCATAAGTTCC---CTCGGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGCC 5244 Query 114482 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTT 114541 | |||||| || |||||| ||| ||| || | |||||||| ||||| || Sbjct 5243 AAATTACAGCAAGCAACCTCATCAGGTGCAGAGTATTCGACGATTTCCGTGCACAAGTTG 5184 Query 114542 GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAA 114601 || || || ||||| | ||||||||||| |||| |||| || ||||| |||||| Sbjct 5183 GAGCTGCGGATTGTGCCGAGATTCTTTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTAA 5124 Query 114602 AGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGC 114660 |||||| | || | || ||||| || || | || ||| |||| | ||| | | | | Sbjct 5123 AGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCCTCGAGGATAGAATACCAAAGCTTTTGA 5064 Query 114661 GGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAA 114720 | || | | ||| | || || | | |||||| || || |||||||| Sbjct 5063 GCCTTG-ATAGTCTTACGGCCTTTACCTTGTTTCTCGTAACCCTCATAAAGAGCTTCAAA 5005 Query 114721 CTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTG 114780 ||| ||||| | | || | | || || | | ||||| | ||| | ||| | Sbjct 5004 CTCATCACCATAGACATCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATC 4945 Query 114781 ACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATC 114840 || || |||||||||||||||||||| ||||| |||||||| || | ||||| || Sbjct 4944 TCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTC 4885 Query 114841 CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATC 114900 || ||| |||| || | || ||||| || | |||||||| || | || ||| Sbjct 4884 GCGTGCTCGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACATC 4825 Query 114901 CGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTG 114954 ||| ||||| ||||| ||||| | |||| || || | | || |||| | || Sbjct 4824 CGCATGCCATGGTTCAAGGTAGATGGCGAATGCACC---AGGGCGCTTGTTACCACCTTG 4768 Query 114955 GTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTG 115014 | ||||| || || || || || || |||||||| |||| |||||| | ||| | Sbjct 4767 ATCGACATATCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATT 4708 Query 115015 GCCATTTGTCCC 115026 |||||||| || Sbjct 4707 TCCATTTGTGCC 4696 >seq5810 Length=707 Score = 105 bits (116), Expect = 8e-18 Identities = 185/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 114464 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 114523 || ||||||| || ||||| || || |||| |||||| || ||||||| || Sbjct 666 GGGAGGGCGAGGGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTGTACTCAATG 607 Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583 || || || |||| || || || ||| || |||| |||||| || || ||| || Sbjct 606 ATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCCTG 547 Query 114584 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 114643 || || ||||||||||| |||||| | || | || ||||| || |||| || |||||| Sbjct 546 TTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGAATG 487 Query 114644 GCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTT 114702 || | ||||| || | | || | | || | | | || ||||| | ||||||||| Sbjct 486 GCATACCAGAGTTTCTGAGCCTTG-ATGGTCTTGCGGCCACGGCCCTCTTGCTCGTACTT 428 Query 114703 TGTGTAGAGGGCTTCAAACTCTTCACC 114729 | ||| ||||| || ||||| || || Sbjct 427 GGCGTAAAGGGCATCGAACTCCTCGCC 401 >seq10338 Length=29807 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || ||||||||||||||||||||||| || || ||||| || || | ||| | ||| Sbjct 13129 TGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGTAAGACCGGCCATCAAACCA 13070 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 |||||||| | |||||| || | |||||||| ||||||||| || || ||| Sbjct 13069 CGCTTCTTGAGCCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCTTCAACAGCA 13010 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGT-GTCAAACCACTTCATCGC 126237 ||||| || | |||||| | |||||| | | |||||| | | ||| | | || Sbjct 13009 GCGAATGCGACGAGACGTTGAGCAAATG-TAGATTCTTTGTCTTGGATCCATCTAACAGC 12951 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGT 126270 ||| | ||||| |||| ||||| ||||| || Sbjct 12950 CCAATCGGCCTTCTTCTTAATACAAGGGACTGT 12918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597265662083160