Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq655 100 3e-16 >seq655 Length=7676 Score = 100 bits (110), Expect = 3e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 ||| ||| |||| || | | ||| | ||||||||| || |||||||||||||| || || Sbjct 3233 AATCTATTGACCACCACGGAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTT 3292 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 ||||| | ||||| | |||| || | ||||| || || || || | || || || Sbjct 3293 ATAATCCGAAAGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTG 3352 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCT 42151 |||| ||| | | |||||||| ||| ||| || | | | | || || Sbjct 3353 ATCGGGTGGAATACCTTCCTTGTCTTGGATCTTTGTCTTTACGTTATCAATGGTATCTGA 3412 Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||||||||| || | ||| || || || || || | ||||| ||||||||||||||| Sbjct 3413 CGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| || || |||||||| || |||||||| | | || || | || || Sbjct 3489 ACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCCATCCTCC 3548 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||||||||||||||| ||||| || ||||| || | ||| | || |||||| | | || Sbjct 3549 AACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTTAT-CTTG 3607 Query 42120 ATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | || || || | | | | || || ||| || || || | ||||| || || Sbjct 3608 AATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACCTCTAATGTGATTGTCTT 3667 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| || ||||| ||||| Sbjct 3668 TCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543132832285680