Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq655 100 3e-16
>seq655
Length=7676
Score = 100 bits (110), Expect = 3e-16
Identities = 165/238 (69%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031
||| ||| |||| || | | ||| | ||||||||| || |||||||||||||| || ||
Sbjct 3233 AATCTATTGACCACCACGGAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTT 3292
Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091
||||| | ||||| | |||| || | ||||| || || || || | || || ||
Sbjct 3293 ATAATCCGAAAGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTG 3352
Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCT 42151
|||| ||| | | |||||||| ||| ||| || | | | | || ||
Sbjct 3353 ATCGGGTGGAATACCTTCCTTGTCTTGGATCTTTGTCTTTACGTTATCAATGGTATCTGA 3412
Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
||||||||| || | ||| || || || || || | ||||| |||||||||||||||
Sbjct 3413 CGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3470
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
|||||||| || || |||||||| || |||||||| | | || || | || ||
Sbjct 3489 ACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCCATCCTCC 3548
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
| ||||||||||||||| ||||| || ||||| || | ||| | || |||||| | | ||
Sbjct 3549 AACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTTAT-CTTG 3607
Query 42120 ATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
| | || || || | | | | || || ||| || || || | ||||| || ||
Sbjct 3608 AATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACCTCTAATGTGATTGTCTT 3667
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || ||||| || ||||| |||||
Sbjct 3668 TCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543132832285680
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |