Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq10763 96.9 3e-15 seq655 91.5 1e-13 >seq10763 Length=10051 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 155222 CAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAA-CACGAAG 155280 |||||| || || ||||| | || || || || |||| ||||| || || || |||| Sbjct 4611 CAAAGTATCATAAATTCCATCAATACTATCCTCCTTCAT-GTCAATGAGGAAGCATGAAG 4553 Query 155281 ATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTT 155340 | | ||| | ||| || || || | || | ||| ||| |||||||||||| || Sbjct 4552 AAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTATT 4493 Query 155341 TGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGA 155400 |||||| |||||||||| ||||| |||||| || || ||| |||||| ||||| | Sbjct 4492 TGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCGTGAATACCAA 4433 Query 155401 TCGCCACGCGCATCAGCATGTGTTG 155425 || || ||||| | ||| ||||| Sbjct 4432 CGGCAACACGCATAATCATTTGTTG 4408 >seq655 Length=7676 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | |||||||| ||||| ||||||||||| | | |||||| | || Sbjct 3485 AAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCCATC 3544 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || | |||||| || || ||||||| || ||||| || || || || || || || || Sbjct 3545 CTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTTATC 3604 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| ||| || | |||||| | || || |||| || | || Sbjct 3605 TTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACCTCTAATGTGATTGT 3664 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | || || ||||| || ||||| Sbjct 3665 CTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499571246039880