Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq10338 96.9 3e-15 seq655 82.4 7e-11 >seq10338 Length=29807 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 47367 ATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAG 47426 |||||| ||| || || |||| ||||| || || | | || |||||| |||| Sbjct 13218 ATTGAGCAGGAATTCTTGACCGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGAT 13277 Query 47427 ATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC 47486 |||||| | | ||||| || || ||||| ||||| || || || || || Sbjct 13278 CTGATGAAACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCCCTTGGTAATGAA 13337 Query 47487 AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAG 47546 ||| |||||| || || |||||||| || ||| | |||||||| |||| |||||| Sbjct 13338 AAGGTTTACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTTCTCTCGCTGGCAAG 13397 Query 47547 ACCAACTTTTTCGAGAAGCGCGT 47569 |||||||| ||||||||||| || Sbjct 13398 ACCAACTTCTTCGAGAAGCGTGT 13420 >seq655 Length=7676 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||||||| || || || ||||| || ||||||||| Sbjct 3470 TCCACCACGAAGACGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGA 3529 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || | ||| || |||||| | || | || |||||||| || || Sbjct 3530 TAAGGTGCGGCCATCCTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGG 3589 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| || || || ||| | | |||| ||| || | |||||| Sbjct 3590 GATGCCCTCCTTATCTTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGAC 3649 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || || || || || || |||||||| Sbjct 3650 CTCTAATGTGATTGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475430800338480