Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq10338 96.9 3e-15
seq655 82.4 7e-11
>seq10338
Length=29807
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 47367 ATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAG 47426
|||||| ||| || || |||| ||||| || || | | || |||||| ||||
Sbjct 13218 ATTGAGCAGGAATTCTTGACCGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGAT 13277
Query 47427 ATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC 47486
|||||| | | ||||| || || ||||| ||||| || || || || ||
Sbjct 13278 CTGATGAAACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCCCTTGGTAATGAA 13337
Query 47487 AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAG 47546
||| |||||| || || |||||||| || ||| | |||||||| |||| ||||||
Sbjct 13338 AAGGTTTACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTTCTCTCGCTGGCAAG 13397
Query 47547 ACCAACTTTTTCGAGAAGCGCGT 47569
|||||||| ||||||||||| ||
Sbjct 13398 ACCAACTTCTTCGAGAAGCGTGT 13420
>seq655
Length=7676
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | || | |||||||||| || || || ||||| || |||||||||
Sbjct 3470 TCCACCACGAAGACGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGA 3529
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| ||||| ||| || | ||| || |||||| | || | || |||||||| || ||
Sbjct 3530 TAAGGTGCGGCCATCCTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGG 3589
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||| || || || ||| | | |||| ||| || | ||||||
Sbjct 3590 GATGCCCTCCTTATCTTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGAC 3649
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || || || || || || || || || ||||||||
Sbjct 3650 CTCTAATGTGATTGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475430800338480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |