Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq655 96.9 3e-15
>seq655
Length=7676
Score = 96.9 bits (106), Expect = 3e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 45150 TCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTAT 45209
||||||||||| |||||||| | ||| || || |||||||| ||||| || |
Sbjct 3279 TCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAG 3338
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
||||| ||||| || || || ||||| ||||| || ||||| | | ||||| | || |
Sbjct 3339 ATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCTTGGA-TCTTTGTCTTTACGTT 3397
Query 45270 -TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328
|| | ||| || || || || ||||| | |||| || || || || | ||| || ||
Sbjct 3398 ATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAAC 3457
Query 45329 AAAAATTTGCAT 45340
||| ||||||||
Sbjct 3458 AAAGATTTGCAT 3469
Score = 93.3 bits (102), Expect = 4e-14
Identities = 156/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || || || | || | ||| || || |||||||||||||| || || |||
Sbjct 3696 ATACCACCACGAAGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCG 3755
Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
|| || | | ||| || | |||||| || ||| | ||||| |||||||| || |
Sbjct 3756 --GAAAGTGTGCGGCCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAG 3813
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287
| || || || || |||||||||| | || || | | || | || | ||||| |||||
Sbjct 3814 GAGGGATACCCTCCTTATCTTGAA-TCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGAT 3872
Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328
|| || || ||||| | || || ||||| ||||| || ||
Sbjct 3873 TCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGAC 3913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451936659478920
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |