Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 188 9e-43
seq5810 100 3e-16
seq10338 96.9 4e-15
>seq10763
Length=10051
Score = 188 bits (208), Expect = 9e-43
Identities = 1105/1741 (63%), Gaps = 37/1741 (2%)
Strand=Plus/Minus
Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617
||||| |||||||| || |||||||| ||| ||||| || | |||||| || |
Sbjct 6128 CGGAGATAGTACATTCCAGTCTTGAGACCCAATTTCCATCCAGCGAAATGCATGGAAGTG 6069
Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677
| |||| | ||| || | |||| | |||||| ||| |||||||| |||||
Sbjct 6068 ATCTTGCCCATTGTAGGGTCCTTCATGTGAATGTTCATCGATTGAGATTGATCAATGAAA 6009
Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTC 115735
|| || || || ||||| | || || || ||| | || ||||||| || ||
Sbjct 6008 GCACCACGGTCTGCGGCCATTTGAA-CA-ATGTTTCGTTGAGAGATTTCCCAAACGGTCT 5951
Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCT 115795
||||||| ||||| || |||| || | |||||||| || || ||||| |
Sbjct 5950 TGTAGAGAGCTTTAATCTCGGCTGGAATGTTGGGAATATTTTGAATGGAACCACCATCAG 5891
Query 115796 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGA 115855
|| || ||| |||||| | | ||||| || || || | | ||||| | |
Sbjct 5890 CGATGATACGATTCTTCATGTTATCAGACCAAAGTCCCATGTCGACCAAATCCTTAAGAA 5831
Query 115856 GGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAGATAGATGTTGGTC 115914
| || || || |||||||| || | || | | || || |||||||
Sbjct 5830 GCCATGGGTTAACGACTTGGAACTCACCGGCCAACACACGGCGTGAG-TAAATGTTGGAA 5772
Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974
||||||||||| || || |||||| ||| | ||||| | |||| ||| || |||||
Sbjct 5771 GTGTATGGCTCGAAACATTCATTGAAACCGAGAATTTGAGATGTGCTGGCAGTTGGCATA 5712
Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034
|| || | || | || || |||| ||| | | || || |||||| | |||
Sbjct 5711 GGAGCAACAAGCAAACTATTCCGGATACCATGTTGCTTGATAGATTGCTTGAGAGAATCC 5652
Query 116035 CAGTCGTAGTTGAGCTTT--GTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGG 116092
|| || | || | | | | | | ||||||||||| | || || ||| | ||
Sbjct 5651 CAATCCCAAA-GATCCGTAGGAGTAACAC-CCCACATATCATATTGAAGCTCACCCTTGG 5594
Query 116093 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGC--- 116149
| |||| ||||| ||| ||| ||| |||||||| ||| || | || || |
Sbjct 5593 AGACTGGAGATCCTTCATATGACTCGTATGGGCCTAATTCCTTGGCTA--TCTGAACAGA 5536
Query 116150 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCT 116209
| || | | | |||| || || |||||||| || | || | ||| || |
Sbjct 5535 TGAAGTCAAAG-CACCGTGGTAGATGGTCTCAAAGATTTGGATGTTGAGATGCTTCGCTT 5477
Query 116210 CGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGA 116269
|| ||||| || | | |||| | || |||| || |||||||| ||||| |
Sbjct 5476 CGGGTGAATCGAATGGTAAACGGAGAGCCAAGAAGGCATCAGCAAGACCTTGAACACCAA 5417
Query 116270 GGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCC 116329
|||| || ||||| | | ||| ||| || || |||||||| ||||
Sbjct 5416 CAGCAATAGGTCGATGACGGAAATTGCTTCTTCTGGCTTCTTCGACGGGATAGTAATTGA 5357
Query 116330 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 116389
||||||||| | | || | ||| || ||||| | || || |||||||||| |
Sbjct 5356 TATCGATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCGTGAAGCTTTTGGA 5297
Query 116390 AATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGCCAGAT 116446
||||| || | | ||| | |||||| | | || || || || || |||| ||
Sbjct 5296 AATCATAAGTTCC---CTCGGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGCCAAAT 5240
Query 116447 TACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAAC 116506
|||| || |||||| ||| ||| || | |||||||| ||||| || || |
Sbjct 5239 TACAGCAAGCAACCTCATCAGGTGCAGAGTATTCGACGATTTCCGTGCACAAGTTGGAGC 5180
Query 116507 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCA 116566
| || ||||| | ||||||||||| |||| |||| || ||||| ||||| ||||
Sbjct 5179 TGCGGATTGTGCCGAGATTCTTTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCA 5120
Query 116567 TATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCT 116625
| | || | || ||||| || || | || ||| |||| | ||| | | | | | ||
Sbjct 5119 TGAAAGGGTTTCCTGTCTCAGTCTGTGCCTCGAGGATAGAATACCAAAGCTTTTGAGCCT 5060
Query 116626 GGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCT 116685
| | ||| | || || | | |||||| || || || ||||||||
Sbjct 5059 TG-ATAGTCTTACGGCCTTTACCTTGTTTCTCGTAACCCTCATAAAGAGCTTCAAACTCA 5001
Query 116686 TCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACC 116744
||||| | || | || | | || || | | || || | ||| | ||| | ||
Sbjct 5000 TCACC-ATAGACATCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCC 4942
Query 116745 ACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804
|| ||||| |||||||||||||| ||||| |||||||| || | ||||| || ||
Sbjct 4941 GTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCG 4882
Query 116805 ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 116864
||| |||| || | || ||||| || | |||||||| || | || ||||||
Sbjct 4881 TGCTCGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGC 4822
Query 116865 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTAC 116921
||||| ||||| ||||| | |||| || || ||| |||| | || | ||
Sbjct 4821 ATGCCATGGTTCAAGGTAGATGGCGAATGCACCAGGGCGCTTGTTACCACCTTGATCGAC 4762
Query 116922 ATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATT 116981
||| || || || ||| || || |||||||| |||| |||||| | ||| | |||||
Sbjct 4761 ATATCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATT 4702
Query 116982 TGTCCCCCGAATACGAG-ACTTGTTGGCTCTGACATC-GTGGATGTGCATACCAATACCC 117039
||| || ||| | || | | || | || || |||||||| | |||||||||
Sbjct 4701 TGTGCCAGCAATGTATGCACCAG-TAGCAC-GAATTCTGTGGATGTTGAGACCAATACCT 4644
Query 117040 CCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAG 117099
|| || ||| || || || || | | | | | | || || ||||| ||
Sbjct 4643 CCAGCATTCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAATACTA 4584
Query 117100 TCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTT 117158
|| |||| | | ||||||||||| || | ||| ||| | ||||||||| |||
Sbjct 4583 TCCTCCTTCATGTCAATGAGGAAGCATGAAGAAAGTTG-GGCTTGTGGTGTACCCGCGGA 4525
Query 117159 GAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCA 117217
|||||| ||||| | ||||| | || || | | |||||| | |||||| || |
Sbjct 4524 GAAGAGTGTTGGAGAAGCGTGTGT-AAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAA 4466
Query 117218 AGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGG 117277
| | || || || ||||||||||| | | || ||||||| ||| | ||| |
Sbjct 4465 TGGCGCTCTCGATATCATCACCGTGAATACCAACGGCAACACGCATAATCATTTGTTGTG 4406
Query 117278 G 117278
|
Sbjct 4405 G 4405
>seq5810
Length=707
Score = 100 bits (110), Expect = 3e-16
Identities = 184/267 (69%), Gaps = 2/267 (1%)
Strand=Plus/Minus
Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484
|| ||||||| || ||||| || || |||| |||||| || ||||||| ||
Sbjct 666 GGGAGGGCGAGGGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTGTACTCAATG 607
Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544
|| || || |||| || || || ||| || |||| |||||| || || ||| ||
Sbjct 606 ATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCCTG 547
Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604
|| || ||||||||||||||||| | || | || ||||| || |||| || ||||||
Sbjct 546 TTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGAATG 487
Query 116605 GCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTT 116663
|| | ||| | || | | || | | || | | | || ||||| | |||||||||
Sbjct 486 GCATACCAGAGTTTCTGAGCCTTG-ATGGTCTTGCGGCCACGGCCCTCTTGCTCGTACTT 428
Query 116664 TGTGTAGAGGGCCTCAAACTCTTCACC 116690
| ||| ||||| || ||||| || ||
Sbjct 427 GGCGTAAAGGGCATCGAACTCCTCGCC 401
>seq10338
Length=29807
Score = 96.9 bits (106), Expect = 4e-15
Identities = 330/507 (65%), Gaps = 8/507 (2%)
Strand=Plus/Minus
Query 127241 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAAT 127300
|| ||||||||||||||||| ||||| ||| |||| || || ||||| || || |||
Sbjct 13420 ACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGAGAAATGTTTTCCATGAAGTCGAAT 13361
Query 127301 GGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACG 127360
||||| | || ||| || |||| || ||||| || | ||||
Sbjct 13360 GGGTTGGTGGAACGGTAAACCTTTTCATTACCAAGGGCAAGAAGAAGACGGTCTGCGACG 13301
Query 127361 TACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCG 127420
|||||||||| | |||| || |||||||| || | ||| |||||| || ||
Sbjct 13300 AACTCAATGTATTGTTTCATCAGATCCGAGTTCATGCCAAGGAGAGCACATGGAAGAGCT 13241
Query 127421 TCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAG--TGT 127478
|| | ||| ||| |||||| ||||| || | || | |||| | |||
Sbjct 13240 TCGGTCAAGAATTCCTGCTCAATTGTAACAGCCTCTGTGATGACATCCTGAACGGCTTGT 13181
Query 127479 CCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAGCAAACTCTTGGTGGAGA 127537
|| || | || || | |||| | |||||| || || || || |||
Sbjct 13180 TTACTT--GGGCGAT-GCTTCAAGTGCGAGAAGAGAAGGCAGGCGAAGTCGGTATGAAGA 13124
Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597
|||||||||||||||||||| || || ||||| ||||| | ||| | ||| ||||||
Sbjct 13123 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGTAAGACCGGCCATCAAACCACGCTTC 13064
Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657
|| | |||||| || | ||||| ||| ||||||||| || || ||| |||||
Sbjct 13063 TTGAGCCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCTTCAACAGCAGCGAAT 13004
Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCATCGCCCACTG 127716
|| | ||||| | ||||| | | |||||| | | ||| | | ||||| |
Sbjct 13003 GCGACGAGACGTTGAGCAAATG-TAGATTCTTTGTCTTGGATCCATCTAACAGCCCAATC 12945
Query 127717 TGCCTTTTTCTCGATACATGGGACGGT 127743
||||| |||| ||||| ||||| ||
Sbjct 12944 GGCCTTCTTCTTAATACAAGGGACTGT 12918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613416884071320
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