Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10763 188 9e-43 seq5810 100 3e-16 seq10338 96.9 4e-15 >seq10763 Length=10051 Score = 188 bits (208), Expect = 9e-43 Identities = 1105/1741 (63%), Gaps = 37/1741 (2%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||| |||||||| || |||||||| ||| ||||| || | |||||| || | Sbjct 6128 CGGAGATAGTACATTCCAGTCTTGAGACCCAATTTCCATCCAGCGAAATGCATGGAAGTG 6069 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | ||| || | |||| | |||||| ||| |||||||| ||||| Sbjct 6068 ATCTTGCCCATTGTAGGGTCCTTCATGTGAATGTTCATCGATTGAGATTGATCAATGAAA 6009 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTC 115735 || || || || ||||| | || || || ||| | || ||||||| || || Sbjct 6008 GCACCACGGTCTGCGGCCATTTGAA-CA-ATGTTTCGTTGAGAGATTTCCCAAACGGTCT 5951 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCT 115795 ||||||| ||||| || |||| || | |||||||| || || ||||| | Sbjct 5950 TGTAGAGAGCTTTAATCTCGGCTGGAATGTTGGGAATATTTTGAATGGAACCACCATCAG 5891 Query 115796 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGA 115855 || || ||| |||||| | | ||||| || || || | | ||||| | | Sbjct 5890 CGATGATACGATTCTTCATGTTATCAGACCAAAGTCCCATGTCGACCAAATCCTTAAGAA 5831 Query 115856 GGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAGATAGATGTTGGTC 115914 | || || || |||||||| || | || | | || || ||||||| Sbjct 5830 GCCATGGGTTAACGACTTGGAACTCACCGGCCAACACACGGCGTGAG-TAAATGTTGGAA 5772 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||||||||| || || |||||| ||| | ||||| | |||| ||| || ||||| Sbjct 5771 GTGTATGGCTCGAAACATTCATTGAAACCGAGAATTTGAGATGTGCTGGCAGTTGGCATA 5712 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034 || || | || | || || |||| ||| | | || || |||||| | ||| Sbjct 5711 GGAGCAACAAGCAAACTATTCCGGATACCATGTTGCTTGATAGATTGCTTGAGAGAATCC 5652 Query 116035 CAGTCGTAGTTGAGCTTT--GTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGG 116092 || || | || | | | | | | ||||||||||| | || || ||| | || Sbjct 5651 CAATCCCAAA-GATCCGTAGGAGTAACAC-CCCACATATCATATTGAAGCTCACCCTTGG 5594 Query 116093 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGC--- 116149 | |||| ||||| ||| ||| ||| |||||||| ||| || | || || | Sbjct 5593 AGACTGGAGATCCTTCATATGACTCGTATGGGCCTAATTCCTTGGCTA--TCTGAACAGA 5536 Query 116150 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCT 116209 | || | | | |||| || || |||||||| || | || | ||| || | Sbjct 5535 TGAAGTCAAAG-CACCGTGGTAGATGGTCTCAAAGATTTGGATGTTGAGATGCTTCGCTT 5477 Query 116210 CGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGA 116269 || ||||| || | | |||| | || |||| || |||||||| ||||| | Sbjct 5476 CGGGTGAATCGAATGGTAAACGGAGAGCCAAGAAGGCATCAGCAAGACCTTGAACACCAA 5417 Query 116270 GGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCC 116329 |||| || ||||| | | ||| ||| || || |||||||| |||| Sbjct 5416 CAGCAATAGGTCGATGACGGAAATTGCTTCTTCTGGCTTCTTCGACGGGATAGTAATTGA 5357 Query 116330 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 116389 ||||||||| | | || | ||| || ||||| | || || |||||||||| | Sbjct 5356 TATCGATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCGTGAAGCTTTTGGA 5297 Query 116390 AATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGCCAGAT 116446 ||||| || | | ||| | |||||| | | || || || || || |||| || Sbjct 5296 AATCATAAGTTCC---CTCGGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGCCAAAT 5240 Query 116447 TACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAAC 116506 |||| || |||||| ||| ||| || | |||||||| ||||| || || | Sbjct 5239 TACAGCAAGCAACCTCATCAGGTGCAGAGTATTCGACGATTTCCGTGCACAAGTTGGAGC 5180 Query 116507 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCA 116566 | || ||||| | ||||||||||| |||| |||| || ||||| ||||| |||| Sbjct 5179 TGCGGATTGTGCCGAGATTCTTTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCA 5120 Query 116567 TATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCT 116625 | | || | || ||||| || || | || ||| |||| | ||| | | | | | || Sbjct 5119 TGAAAGGGTTTCCTGTCTCAGTCTGTGCCTCGAGGATAGAATACCAAAGCTTTTGAGCCT 5060 Query 116626 GGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCT 116685 | | ||| | || || | | |||||| || || || |||||||| Sbjct 5059 TG-ATAGTCTTACGGCCTTTACCTTGTTTCTCGTAACCCTCATAAAGAGCTTCAAACTCA 5001 Query 116686 TCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACC 116744 ||||| | || | || | | || || | | || || | ||| | ||| | || Sbjct 5000 TCACC-ATAGACATCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCC 4942 Query 116745 ACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804 || ||||| |||||||||||||| ||||| |||||||| || | ||||| || || Sbjct 4941 GTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCG 4882 Query 116805 ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 116864 ||| |||| || | || ||||| || | |||||||| || | || |||||| Sbjct 4881 TGCTCGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGC 4822 Query 116865 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTAC 116921 ||||| ||||| ||||| | |||| || || ||| |||| | || | || Sbjct 4821 ATGCCATGGTTCAAGGTAGATGGCGAATGCACCAGGGCGCTTGTTACCACCTTGATCGAC 4762 Query 116922 ATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATT 116981 ||| || || || ||| || || |||||||| |||| |||||| | ||| | ||||| Sbjct 4761 ATATCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATT 4702 Query 116982 TGTCCCCCGAATACGAG-ACTTGTTGGCTCTGACATC-GTGGATGTGCATACCAATACCC 117039 ||| || ||| | || | | || | || || |||||||| | ||||||||| Sbjct 4701 TGTGCCAGCAATGTATGCACCAG-TAGCAC-GAATTCTGTGGATGTTGAGACCAATACCT 4644 Query 117040 CCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAG 117099 || || ||| || || || || | | | | | | || || ||||| || Sbjct 4643 CCAGCATTCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAATACTA 4584 Query 117100 TCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTT 117158 || |||| | | ||||||||||| || | ||| ||| | ||||||||| ||| Sbjct 4583 TCCTCCTTCATGTCAATGAGGAAGCATGAAGAAAGTTG-GGCTTGTGGTGTACCCGCGGA 4525 Query 117159 GAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCA 117217 |||||| ||||| | ||||| | || || | | |||||| | |||||| || | Sbjct 4524 GAAGAGTGTTGGAGAAGCGTGTGT-AAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAA 4466 Query 117218 AGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGG 117277 | | || || || ||||||||||| | | || ||||||| ||| | ||| | Sbjct 4465 TGGCGCTCTCGATATCATCACCGTGAATACCAACGGCAACACGCATAATCATTTGTTGTG 4406 Query 117278 G 117278 | Sbjct 4405 G 4405 >seq5810 Length=707 Score = 100 bits (110), Expect = 3e-16 Identities = 184/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 || ||||||| || ||||| || || |||| |||||| || ||||||| || Sbjct 666 GGGAGGGCGAGGGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTGTACTCAATG 607 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 || || || |||| || || || ||| || |||| |||||| || || ||| || Sbjct 606 ATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCCTG 547 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 || || ||||||||||||||||| | || | || ||||| || |||| || |||||| Sbjct 546 TTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGAATG 487 Query 116605 GCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTT 116663 || | ||| | || | | || | | || | | | || ||||| | ||||||||| Sbjct 486 GCATACCAGAGTTTCTGAGCCTTG-ATGGTCTTGCGGCCACGGCCCTCTTGCTCGTACTT 428 Query 116664 TGTGTAGAGGGCCTCAAACTCTTCACC 116690 | ||| ||||| || ||||| || || Sbjct 427 GGCGTAAAGGGCATCGAACTCCTCGCC 401 >seq10338 Length=29807 Score = 96.9 bits (106), Expect = 4e-15 Identities = 330/507 (65%), Gaps = 8/507 (2%) Strand=Plus/Minus Query 127241 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAAT 127300 || ||||||||||||||||| ||||| ||| |||| || || ||||| || || ||| Sbjct 13420 ACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGAGAAATGTTTTCCATGAAGTCGAAT 13361 Query 127301 GGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACG 127360 ||||| | || ||| || |||| || ||||| || | |||| Sbjct 13360 GGGTTGGTGGAACGGTAAACCTTTTCATTACCAAGGGCAAGAAGAAGACGGTCTGCGACG 13301 Query 127361 TACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCG 127420 |||||||||| | |||| || |||||||| || | ||| |||||| || || Sbjct 13300 AACTCAATGTATTGTTTCATCAGATCCGAGTTCATGCCAAGGAGAGCACATGGAAGAGCT 13241 Query 127421 TCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAG--TGT 127478 || | ||| ||| |||||| ||||| || | || | |||| | ||| Sbjct 13240 TCGGTCAAGAATTCCTGCTCAATTGTAACAGCCTCTGTGATGACATCCTGAACGGCTTGT 13181 Query 127479 CCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAGCAAACTCTTGGTGGAGA 127537 || || | || || | |||| | |||||| || || || || ||| Sbjct 13180 TTACTT--GGGCGAT-GCTTCAAGTGCGAGAAGAGAAGGCAGGCGAAGTCGGTATGAAGA 13124 Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||||||||||||||| || || ||||| ||||| | ||| | ||| |||||| Sbjct 13123 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGTAAGACCGGCCATCAAACCACGCTTC 13064 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | ||||| ||| ||||||||| || || ||| ||||| Sbjct 13063 TTGAGCCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCTTCAACAGCAGCGAAT 13004 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCATCGCCCACTG 127716 || | ||||| | ||||| | | |||||| | | ||| | | ||||| | Sbjct 13003 GCGACGAGACGTTGAGCAAATG-TAGATTCTTTGTCTTGGATCCATCTAACAGCCCAATC 12945 Query 127717 TGCCTTTTTCTCGATACATGGGACGGT 127743 ||||| |||| ||||| ||||| || Sbjct 12944 GGCCTTCTTCTTAATACAAGGGACTGT 12918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613416884071320