Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq655 111 4e-19 seq10174 102 2e-16 >seq655 Length=7676 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||| || || | ||||||||||| |||||||||| ||||||||| | | || Sbjct 3705 CGAAGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTG 3764 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || || || |||||||| | ||| ||||| || ||| || || Sbjct 3765 CGGCCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCC 3824 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| ||| |||| ||||| | | ||| || || | Sbjct 3825 TCCTTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGA 3884 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 ||||| ||||| || || ||||| || || Sbjct 3885 GTGATAGTCTTTCCGGTAAGAGTCTTGAC 3913 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 ||||||||||| ||| || || | | ||| || || || |||| ||||||||||| || Sbjct 3278 CTCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAA 3337 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||| | ||| || || || || ||| ||||| || || |||||| ||| ||| Sbjct 3338 GATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCTTGGATCTTTGTCTTTACGTT 3397 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 || | ||| |||| | ||| || |||||||| || ||||| || || | ||| || || Sbjct 3398 ATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAAC 3457 Query 199618 AAAAATTTG 199626 ||| ||||| Sbjct 3458 AAAGATTTG 3466 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || |||||||| |||||||| |||| ||||||||| | | || Sbjct 3990 CGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTG 4049 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| || || ||||| | |||||| ||||| ||| || || Sbjct 4050 CGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGGATACCC 4109 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || |||| ||||| | | ||| || || | Sbjct 4110 TCCTTATCCTGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGATTCAACCTCAAGG 4169 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| ||||| || || Sbjct 4170 GTGATGGTCTTGCCGGT 4186 >seq10174 Length=26070 Score = 102 bits (112), Expect = 2e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||| || || | | ||| | ||||||||| || |||||||||||||||| Sbjct 24503 CCTTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGA 24562 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | ||| || |||||||| |||||| || || |||||||| ||| || | Sbjct 24563 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGT 24622 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||||| | | ||| || || | ||||| ||||||||||| Sbjct 24623 CGATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGT 24668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178743709204059