Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq655 91.5 1e-13 seq10174 82.4 8e-11 >seq655 Length=7676 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || ||||| | || |||||| | | Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | || | | |||| || || | || || ||||| || || | || | Sbjct 3637 GATACCATCGATAATG--TGAAGACTAAGATTCAAGATAAGGAGGGCATCCCACCTGATC 3580 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || ||||||| ||| || || ||| |||| || | |||||| | ||| |||| Sbjct 3579 AGCAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACA 3520 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||| |||| | |||||||| || ||| Sbjct 3519 ACATCCAAAAGGAATCGACTTTACATTTGGTACTTCGT 3482 >seq10174 Length=26070 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 38248 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 ||||| ||||| || || | ||||| || ||||||||| | || ||||| || |||| Sbjct 24690 AAATAGCTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCGA 24631 Query 38306 CAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | || | | |||| || || | ||||| |||||||||||| | |||||| Sbjct 24630 CACTATCGACAATG--TCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGACCAA 24573 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || || || || || || | ||||| || ||| || ||| Sbjct 24572 CAACGTTTGATCTTCGCCGGAAAGCAACTTGAAGATGGACGCACTCTATCCGATTATAAC 24513 Query 38424 ATCCAAAAGG 38433 |||||||||| Sbjct 24512 ATCCAAAAGG 24503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500099168311680