Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq655 91.5 1e-13
seq10174 82.4 8e-11
>seq655
Length=7676
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || || || || ||||| | || |||||| | |
Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | | || | | |||| || || | || || ||||| || || | || |
Sbjct 3637 GATACCATCGATAATG--TGAAGACTAAGATTCAAGATAAGGAGGGCATCCCACCTGATC 3580
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| || || ||||||| ||| || || ||| |||| || | |||||| | ||| ||||
Sbjct 3579 AGCAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACA 3520
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||||||||| |||| | |||||||| || |||
Sbjct 3519 ACATCCAAAAGGAATCGACTTTACATTTGGTACTTCGT 3482
>seq10174
Length=26070
Score = 82.4 bits (90), Expect = 8e-11
Identities = 135/190 (71%), Gaps = 6/190 (3%)
Strand=Plus/Minus
Query 38248 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305
||||| ||||| || || | ||||| || ||||||||| | || ||||| || ||||
Sbjct 24690 AAATAGCTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCGA 24631
Query 38306 CAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | || | | |||| || || | ||||| |||||||||||| | ||||||
Sbjct 24630 CACTATCGACAATG--TCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGACCAA 24573
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | || | ||| || || || || || || | ||||| || ||| || |||
Sbjct 24572 CAACGTTTGATCTTCGCCGGAAAGCAACTTGAAGATGGACGCACTCTATCCGATTATAAC 24513
Query 38424 ATCCAAAAGG 38433
||||||||||
Sbjct 24512 ATCCAAAAGG 24503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500099168311680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |