Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq10097 138 4e-27
seq655 114 5e-20
seq10174 113 2e-19
>seq10097
Length=29191
Score = 138 bits (152), Expect = 4e-27
Identities = 202/286 (71%), Gaps = 11/286 (4%)
Strand=Plus/Minus
Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379
|||| || | ||||||||||| || ||||| || | ||||| ||||| || |||||||
Sbjct 18288 ATGCTGTTGTCACTGTTCCCGCCTACTTCAACGACTCCCAACGTCAAGCGACCAAAGATG 18229
Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439
| || || ||||| || || || |||||| || | | || || || || |||||||| |
Sbjct 18228 CTGGTCAAATTGCCGGCTTGAACGTTCTTAGAGTGGTCAACGAGCCAACCGCAGCTGCAC 18169
Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGAT 451498
| || ||||| || | ||||| | || || || | || ||| | |||
Sbjct 18168 TTGCCTATGGTCTTG----------AGAAAGATGAGGACAAGATCATCGCAGTCTACGAT 18119
Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558
|| |||||||| || ||||| ||||| || ||| | | || ||||| |||||
Sbjct 18118 TTGGGTGGAGGTACCTTTGATATCTCTGTTCTCGAGATTCAGAAGGGTGTATTCGAAGTC 18059
Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604
||| | |||||||||||||| || | |||||||||||| | ||||
Sbjct 18058 AAGTCTACCAATGGTGATACCCACTTGGGAGGTGAAGATTTCGATA 18013
>seq655
Length=7676
Score = 114 bits (126), Expect = 5e-20
Identities = 144/194 (74%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || || ||||| || ||||||| || || ||||| | || || ||||| ||
Sbjct 3470 AATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAATCGTC 3411
Query 391109 TGATAACATTGA-AGCTATTAAACAAAAA-ATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166
|||| |||||| | | |||| | ||| || ||||| |||||||| ||||| || |||
Sbjct 3410 AGATACCATTGATAACG--TAAAGACAAAGATCCAAGACAAGGAAGGTATTCCACCCGAT 3353
Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226
||||||||||| || || | || || ||| | || || || |||||| | ||||||||
Sbjct 3352 CAACAACGTTTGATCTTTGCCGGAAAGCAATTGGAGGACGGTAGAACTCTTTCGGATTAT 3293
Query 391227 AATATTGATAAGGA 391240
|| || | |||||
Sbjct 3292 AACATCCAAAAGGA 3279
Score = 109 bits (120), Expect = 2e-18
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119
|||| || || || || || || ||||| |||||||| |||||||| || || | || |
Sbjct 3915 TCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCG 3856
Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179
| |||| || |||||||||||||| || || ||||||||||| |||||||| |
Sbjct 3855 ACAACGTTAAGACTAAGATTCAAGATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTGA 3796
Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGG 391207
| ||| | || |||||||| ||||||||
Sbjct 3795 TCTTCGCTGGTAAACAACTCGAAGATGG 3768
Score = 87.8 bits (96), Expect = 7e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || || ||||| || || || || | || || || || |||
Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||| || | | || || |||||||||||||| || || || ||||||||
Sbjct 3637 GATACCATCGATAATGTGAAGACTAAGATTCAAGATAAGGAGGGCATCCCACCTGATCAG 3578
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||| | |||||| | || || || | || ||||| | || || | ||||| ||
Sbjct 3577 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACAAC 3518
Query 391230 ATTGATAAGGA 391240
|| | |||||
Sbjct 3517 ATCCAAAAGGA 3507
>seq10174
Length=26070
Score = 113 bits (124), Expect = 2e-19
Identities = 137/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112
|||| ||||| || || |||| ||||| || || || ||||| || ||||| || ||
Sbjct 24689 AATAGCTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCGAC 24630
Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172
| || || | | || || |||||||| ||||| |||||||| || || ||||||
Sbjct 24629 ACTATCGACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGACCAACAA 24570
Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232
||||| || ||| | || || ||||||||||||||| | ||| | | |||||||| ||
Sbjct 24569 CGTTTGATCTTCGCCGGAAAGCAACTTGAAGATGGACGCACTCTATCCGATTATAACATC 24510
Query 391233 GATAAGG 391239
| ||||
Sbjct 24509 CAAAAGG 24503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975420278293916
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |