Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq10097 138 4e-27 seq655 114 5e-20 seq10174 113 2e-19 >seq10097 Length=29191 Score = 138 bits (152), Expect = 4e-27 Identities = 202/286 (71%), Gaps = 11/286 (4%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || | ||||||||||| || ||||| || | ||||| ||||| || ||||||| Sbjct 18288 ATGCTGTTGTCACTGTTCCCGCCTACTTCAACGACTCCCAACGTCAAGCGACCAAAGATG 18229 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || ||||| || || || |||||| || | | || || || || |||||||| | Sbjct 18228 CTGGTCAAATTGCCGGCTTGAACGTTCTTAGAGTGGTCAACGAGCCAACCGCAGCTGCAC 18169 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || ||||| || | ||||| | || || || | || ||| | ||| Sbjct 18168 TTGCCTATGGTCTTG----------AGAAAGATGAGGACAAGATCATCGCAGTCTACGAT 18119 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 || |||||||| || ||||| ||||| || ||| | | || ||||| ||||| Sbjct 18118 TTGGGTGGAGGTACCTTTGATATCTCTGTTCTCGAGATTCAGAAGGGTGTATTCGAAGTC 18059 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 ||| | |||||||||||||| || | |||||||||||| | |||| Sbjct 18058 AAGTCTACCAATGGTGATACCCACTTGGGAGGTGAAGATTTCGATA 18013 >seq655 Length=7676 Score = 114 bits (126), Expect = 5e-20 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || ||||| || ||||||| || || ||||| | || || ||||| || Sbjct 3470 AATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAATCGTC 3411 Query 391109 TGATAACATTGA-AGCTATTAAACAAAAA-ATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 |||| |||||| | | |||| | ||| || ||||| |||||||| ||||| || ||| Sbjct 3410 AGATACCATTGATAACG--TAAAGACAAAGATCCAAGACAAGGAAGGTATTCCACCCGAT 3353 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 ||||||||||| || || | || || ||| | || || || |||||| | |||||||| Sbjct 3352 CAACAACGTTTGATCTTTGCCGGAAAGCAATTGGAGGACGGTAGAACTCTTTCGGATTAT 3293 Query 391227 AATATTGATAAGGA 391240 || || | ||||| Sbjct 3292 AACATCCAAAAGGA 3279 Score = 109 bits (120), Expect = 2e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119 |||| || || || || || || ||||| |||||||| |||||||| || || | || | Sbjct 3915 TCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCG 3856 Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179 | |||| || |||||||||||||| || || ||||||||||| |||||||| | Sbjct 3855 ACAACGTTAAGACTAAGATTCAAGATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTGA 3796 Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGG 391207 | ||| | || |||||||| |||||||| Sbjct 3795 TCTTCGCTGGTAAACAACTCGAAGATGG 3768 Score = 87.8 bits (96), Expect = 7e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || ||||| || || || || | || || || || ||| Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | | || || |||||||||||||| || || || |||||||| Sbjct 3637 GATACCATCGATAATGTGAAGACTAAGATTCAAGATAAGGAGGGCATCCCACCTGATCAG 3578 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | |||||| | || || || | || ||||| | || || | ||||| || Sbjct 3577 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACAAC 3518 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 3517 ATCCAAAAGGA 3507 >seq10174 Length=26070 Score = 113 bits (124), Expect = 2e-19 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 |||| ||||| || || |||| ||||| || || || ||||| || ||||| || || Sbjct 24689 AATAGCTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCGAC 24630 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | || || | | || || |||||||| ||||| |||||||| || || |||||| Sbjct 24629 ACTATCGACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGACCAACAA 24570 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 ||||| || ||| | || || ||||||||||||||| | ||| | | |||||||| || Sbjct 24569 CGTTTGATCTTCGCCGGAAAGCAACTTGAAGATGGACGCACTCTATCCGATTATAACATC 24510 Query 391233 GATAAGG 391239 | |||| Sbjct 24509 CAAAAGG 24503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975420278293916