Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq10370 158 9e-33
seq1304 125 5e-23
seq10097 95.1 9e-14
>seq10370
Length=25047
Score = 158 bits (174), Expect = 9e-33
Identities = 457/699 (65%), Gaps = 6/699 (1%)
Strand=Plus/Minus
Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074
|| ||||| ||||| ||||| ||||| ||||| | ||| | |||| || | | ||
Sbjct 14000 ACCAGACGGTTATCGAAATCCTCACCACCCAAGTGAGTGTCACCTGCAGTGGACTTGACC 13941
Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134
| ||| | || || || | || || |||| ||||| |||||| ||||| | |||
Sbjct 13940 TCGAAGATACCTTCCTCGATAGTCAGGAGAGAGACATCGAAGGTTCCTCCACCAAGATCG 13881
Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194
|| ||||| ||||| ||| || || || || | ||| || |||| || ||
Sbjct 13880 AAGATAAGAACATTACGTTCACCCTCGACCTTCTTGTCCAAACCGTAAGCAATGGCGGCT 13821
Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254
|| || || || || || ||||| | ||| |||||||||||||| || ||||| ||
Sbjct 13820 GCGGTAGGCTCGTTGATGATTCTGAGAACGTTAAGACCAGCAATCAGACCAGCATCCTTT 13761
Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314
|||||||| | ||| |||||| | || || || || ||||| | || || | | ||
Sbjct 13760 GTGGCTTGACGTTGGGAATCGGTGAAGTAAGCTGGGACAGTGACGACAGCGTTGTTGACA 13701
Query 518315 TCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 518374
| ||| | ||||| || || | | |||| || || | ||| ||||| ||
Sbjct 13700 GTTCCACCGAGGTAAGCCTCAGCAGTCTCTCTCATCTTGACCAAGACCATCGATGAGATC 13641
Query 518375 TGTTCTGGGGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATT 518433
| || || | ||||||| ||| |||| | | || |||| ||| ||
Sbjct 13640 TCCTCAGGTGTGAATTGCTTTTGTTCTCCCTTGAACTCA-ACCTCAATGACTGGCTTTCC 13582
Query 518434 ACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG--TCA 518491
| || | ||| || || ||||| | | |||||||| | ||| |||| | ||
Sbjct 13581 AGCACGGTCAATGACCTTGAATGGGAAATGCTTCATATCGGCTTG--TACTTCAGCATCT 13524
Query 518492 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCA 518551
|| | | || ||||| || || ||||| || | || || ||| || || ||
Sbjct 13523 GCGAACTTGCGTCCGATTAAACGCTTGGCATCGAAGACGGTGTTATATGGGTTCATGGCG 13464
Query 518552 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 518611
|||| | ||||| |||||||| |||| | | || || || || || | ||| | ||
Sbjct 13463 ACTTGGTTCTTGGCGGCATCTCCGATCAAACGCTCAGTATCGGTGAAAGCAACGAACGAA 13404
Query 518612 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 518671
||||| || || || ||||| ||||| ||||||||||| | | | ||| | | | |
Sbjct 13403 GGAGTGGTTCGGTTTCCTTGGTCATTGGCAATAATTTCGATTCTGTCATCTCTGAAGATA 13344
Query 518672 CCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710
||||||||| | || || || ||||| ||||| |||
Sbjct 13343 CCTACACAAGAGTAGGTGGTACCCAAATCGATACCGATA 13305
Score = 113 bits (124), Expect = 3e-19
Identities = 247/368 (67%), Gaps = 3/368 (1%)
Strand=Plus/Minus
Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333
||||| |||||||| | ||| || ||||| || |||||||| || || | | ||||||
Sbjct 14819 ATACCGTTGGCATCAATATCGAAGGTGACCTCGATTTGAGGAACACCACGGGGCGCAGGT 14760
Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393
||||| || | | ||| | |||| || || || || ||| || || |||
Sbjct 14759 GGGATACCAGTAAGTTCGAATTTACCCATCAAGTTGTTGTCCTTGGTGCGTTGACGCTCA 14700
Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453
|||||||||| ||| || || ||| ||| || || || | || | || ||| |
Sbjct 14699 CCCTCGAAAACTTGAATGAGCACACCAGGTTGGTTGTCGGAGAAGGTGGAGAAAACTTCG 14640
Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513
||||| || ||| || || ||||||| ||| | |||||||| ||||| ||
Sbjct 14639 GATTTCTTGGTAGGGATAGTGGTGTTTCGGGGAATGAGCTTGGTCATCTGTCCACCAGCA 14580
Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571
|| || | ||| ||||| | || | |||||| | || | || | || | | ||
Sbjct 14579 GTCTCAATACCGAGAGACAACGGCGCGACATCGAGAAGAAGGATCTCGTTGGTGGACTTG 14520
Query 517572 CAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630
|| ||| | |||| ||||| || || || | |||||||| ||||||||||| |||
Sbjct 14519 GATGAAGTGTCACCAGAGAGAATGGCGGCCTGGACGGCAGCACCGTATGCAACAGCCTCA 14460
Query 517631 TCAGGATT 517638
||||| ||
Sbjct 14459 TCAGGGTT 14452
>seq1304
Length=7141
Score = 125 bits (138), Expect = 5e-23
Identities = 128/167 (77%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914
|| || || || ||| || | ||||||||||||||||||||||||||| | ||||| |||
Sbjct 4528 GGAAAGGAGGGACGTCTTCGTGGAAATTTGATGGGAAAACGTGTCGATTTCTCTGCGCGT 4469
Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTATT 668974
|| || || ||| |||||| ||| || |||| ||||||| |||||||| | | |||
Sbjct 4468 ACTGTCATCACTGGTGATCCTAATCTTTCTCTTGATGAAGTCGGTGTTCCACGAAGTATC 4409
Query 668975 GCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGA 669021
|||| || ||| || || ||| | ||||||| || ||||||||
Sbjct 4408 GCTAGAATTCTCACATTCCCCGAGACTGTAACACCACTCAATATTGA 4362
>seq10097
Length=29191
Score = 95.1 bits (104), Expect = 9e-14
Identities = 195/287 (68%), Gaps = 10/287 (3%)
Strand=Plus/Plus
Query 518022 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 518081
|| |||| ||||||||||||||||| | |||| || |||| | |||| ||| |
Sbjct 18010 GAATATCGAAATCTTCACCTCCCAAGTGGGTATCACCATTGGTAGACTTGACTTCGAATA 18069
Query 518082 GTCCATCTTCAAGA--GACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139
|| | | || || || |||| || ||| ||| || ||||||| ||| | |
Sbjct 18070 CACCCTTCTGAATCTCGAGAACAGAGATA--TCAAAGGTACCTCCACCCAAATCGTAGAC 18127
Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199
| | | || | |||| | | ||| ||||||||||| |||| ||||| || ||
Sbjct 18128 ---TGCGATGATCT---TGTCCTCATCTTTCTCAAGACCATAGGCAAGTGCAGCTGCGGT 18181
Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259
||| || || | | ||| | ||| || | || |||||| || |||||||| || ||
Sbjct 18182 TGGCTCGTTGACCACTCTAAGAACGTTCAAGCCGGCAATTTGACCAGCATCTTTGGTCGC 18241
Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306
||| | ||| || ||||| || || || |||||||| | ||| ||||
Sbjct 18242 TTGACGTTGGGAGTCGTTGAAGTAGGCGGGAACAGTGACAACAGCAT 18288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780237986466562
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |