Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq10370 158 9e-33 seq1304 125 5e-23 seq10097 95.1 9e-14 >seq10370 Length=25047 Score = 158 bits (174), Expect = 9e-33 Identities = 457/699 (65%), Gaps = 6/699 (1%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || ||||| ||||| ||||| ||||| ||||| | ||| | |||| || | | || Sbjct 14000 ACCAGACGGTTATCGAAATCCTCACCACCCAAGTGAGTGTCACCTGCAGTGGACTTGACC 13941 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | || || || | || || |||| ||||| |||||| ||||| | ||| Sbjct 13940 TCGAAGATACCTTCCTCGATAGTCAGGAGAGAGACATCGAAGGTTCCTCCACCAAGATCG 13881 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || ||||| ||||| ||| || || || || | ||| || |||| || || Sbjct 13880 AAGATAAGAACATTACGTTCACCCTCGACCTTCTTGTCCAAACCGTAAGCAATGGCGGCT 13821 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || || || || || || ||||| | ||| |||||||||||||| || ||||| || Sbjct 13820 GCGGTAGGCTCGTTGATGATTCTGAGAACGTTAAGACCAGCAATCAGACCAGCATCCTTT 13761 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 |||||||| | ||| |||||| | || || || || ||||| | || || | | || Sbjct 13760 GTGGCTTGACGTTGGGAATCGGTGAAGTAAGCTGGGACAGTGACGACAGCGTTGTTGACA 13701 Query 518315 TCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 518374 | ||| | ||||| || || | | |||| || || | ||| ||||| || Sbjct 13700 GTTCCACCGAGGTAAGCCTCAGCAGTCTCTCTCATCTTGACCAAGACCATCGATGAGATC 13641 Query 518375 TGTTCTGGGGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATT 518433 | || || | ||||||| ||| |||| | | || |||| ||| || Sbjct 13640 TCCTCAGGTGTGAATTGCTTTTGTTCTCCCTTGAACTCA-ACCTCAATGACTGGCTTTCC 13582 Query 518434 ACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG--TCA 518491 | || | ||| || || ||||| | | |||||||| | ||| |||| | || Sbjct 13581 AGCACGGTCAATGACCTTGAATGGGAAATGCTTCATATCGGCTTG--TACTTCAGCATCT 13524 Query 518492 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCA 518551 || | | || ||||| || || ||||| || | || || ||| || || || Sbjct 13523 GCGAACTTGCGTCCGATTAAACGCTTGGCATCGAAGACGGTGTTATATGGGTTCATGGCG 13464 Query 518552 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 518611 |||| | ||||| |||||||| |||| | | || || || || || | ||| | || Sbjct 13463 ACTTGGTTCTTGGCGGCATCTCCGATCAAACGCTCAGTATCGGTGAAAGCAACGAACGAA 13404 Query 518612 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 518671 ||||| || || || ||||| ||||| ||||||||||| | | | ||| | | | | Sbjct 13403 GGAGTGGTTCGGTTTCCTTGGTCATTGGCAATAATTTCGATTCTGTCATCTCTGAAGATA 13344 Query 518672 CCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710 ||||||||| | || || || ||||| ||||| ||| Sbjct 13343 CCTACACAAGAGTAGGTGGTACCCAAATCGATACCGATA 13305 Score = 113 bits (124), Expect = 3e-19 Identities = 247/368 (67%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 ||||| |||||||| | ||| || ||||| || |||||||| || || | | |||||| Sbjct 14819 ATACCGTTGGCATCAATATCGAAGGTGACCTCGATTTGAGGAACACCACGGGGCGCAGGT 14760 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || | | ||| | |||| || || || || ||| || || ||| Sbjct 14759 GGGATACCAGTAAGTTCGAATTTACCCATCAAGTTGTTGTCCTTGGTGCGTTGACGCTCA 14700 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 |||||||||| ||| || || ||| ||| || || || | || | || ||| | Sbjct 14699 CCCTCGAAAACTTGAATGAGCACACCAGGTTGGTTGTCGGAGAAGGTGGAGAAAACTTCG 14640 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 ||||| || ||| || || ||||||| ||| | |||||||| ||||| || Sbjct 14639 GATTTCTTGGTAGGGATAGTGGTGTTTCGGGGAATGAGCTTGGTCATCTGTCCACCAGCA 14580 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571 || || | ||| ||||| | || | |||||| | || | || | || | | || Sbjct 14579 GTCTCAATACCGAGAGACAACGGCGCGACATCGAGAAGAAGGATCTCGTTGGTGGACTTG 14520 Query 517572 CAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 || ||| | |||| ||||| || || || | |||||||| ||||||||||| ||| Sbjct 14519 GATGAAGTGTCACCAGAGAGAATGGCGGCCTGGACGGCAGCACCGTATGCAACAGCCTCA 14460 Query 517631 TCAGGATT 517638 ||||| || Sbjct 14459 TCAGGGTT 14452 >seq1304 Length=7141 Score = 125 bits (138), Expect = 5e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 || || || || ||| || | ||||||||||||||||||||||||||| | ||||| ||| Sbjct 4528 GGAAAGGAGGGACGTCTTCGTGGAAATTTGATGGGAAAACGTGTCGATTTCTCTGCGCGT 4469 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTATT 668974 || || || ||| |||||| ||| || |||| ||||||| |||||||| | | ||| Sbjct 4468 ACTGTCATCACTGGTGATCCTAATCTTTCTCTTGATGAAGTCGGTGTTCCACGAAGTATC 4409 Query 668975 GCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGA 669021 |||| || ||| || || ||| | ||||||| || |||||||| Sbjct 4408 GCTAGAATTCTCACATTCCCCGAGACTGTAACACCACTCAATATTGA 4362 >seq10097 Length=29191 Score = 95.1 bits (104), Expect = 9e-14 Identities = 195/287 (68%), Gaps = 10/287 (3%) Strand=Plus/Plus Query 518022 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 518081 || |||| ||||||||||||||||| | |||| || |||| | |||| ||| | Sbjct 18010 GAATATCGAAATCTTCACCTCCCAAGTGGGTATCACCATTGGTAGACTTGACTTCGAATA 18069 Query 518082 GTCCATCTTCAAGA--GACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 || | | || || || |||| || ||| ||| || ||||||| ||| | | Sbjct 18070 CACCCTTCTGAATCTCGAGAACAGAGATA--TCAAAGGTACCTCCACCCAAATCGTAGAC 18127 Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 | | | || | |||| | | ||| ||||||||||| |||| ||||| || || Sbjct 18128 ---TGCGATGATCT---TGTCCTCATCTTTCTCAAGACCATAGGCAAGTGCAGCTGCGGT 18181 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 ||| || || | | ||| | ||| || | || |||||| || |||||||| || || Sbjct 18182 TGGCTCGTTGACCACTCTAAGAACGTTCAAGCCGGCAATTTGACCAGCATCTTTGGTCGC 18241 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 ||| | ||| || ||||| || || || |||||||| | ||| |||| Sbjct 18242 TTGACGTTGGGAGTCGTTGAAGTAGGCGGGAACAGTGACAACAGCAT 18288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780237986466562