Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq10370 297 2e-75 seq1669 138 1e-27 seq10763 127 3e-24 seq10097 113 6e-20 seq11222 91.5 2e-13 >seq10370 Length=25047 Score = 297 bits (328), Expect = 2e-75 Identities = 516/742 (70%), Gaps = 10/742 (1%) Strand=Plus/Minus Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGA-GAAGTGTCGAAGGAGTCTCGAATCGAAATC 7464 ||||| |||||||| || ||||| | || |||||| || || | ||||||||| Sbjct 14039 TTCTTGTGTTTACGCTTGAACTCG-CTGACGAAGTGGTTAACCAGACGGTTATCGAAATC 13981 Query 7465 TTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAAT 7524 |||||||||||||| || || || || || | ||||| || ||||||||| | || || Sbjct 13980 CTCACCACCCAAGTGAGTGTCACCTGCAGTGGACTTGACCTCGAAGATACCTTCCTCGAT 13921 Query 7525 GTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTAT 7583 | | | || ||||| || || || ||||| || || || || || || || ||| | Sbjct 13920 AGTCAGGAGAGAGACATCGAAGGTTCCTCCACCAAGATCGAAGATAAGAACATTACGT-T 13862 Query 7584 CGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAA 7643 | | || ||||| || | |||||| || || || || || || || || || || | Sbjct 13861 CACCCTCGACCTTCTTGTCCAAACCGTAAGCAATGGCGGCTGCGGTAGGCTCGTTGATGA 13802 Query 7644 TACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAAT 7703 | | ||| ||| || |||||||| | ||||| || || ||||| ||||| |||| Sbjct 13801 TTCTGAGAACGTTAAGACCAGCAATCAGACCAGCATCCTTTGTGGCTTGACGTTGGGAAT 13742 Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763 || | ||||| || ||||| || ||||| |||| |||| | |||||| || | | Sbjct 13741 CGGTGAAGTAAGCTGGGACAGTGACGACAGCGTTGTTGACAGTTCCACCGAGGTAAGCCT 13682 Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823 | || | ||| |||| ||| | ||||||||||| ||||| |||| | || || | Sbjct 13681 CAGCAGTCTCTCTCATCTTGACCAAGACCATCGATGAGATCTCCTCAGGTGTGAATTGCT 13622 Query 7824 TCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCT 7883 | ||| || || || ||||| ||||| | || || || |||||| | || |||| Sbjct 13621 TTTGTTCTCCCTTGAACTCAACCTCAATGACTGGCTT-TC--CAGCACGGTCAATGACCT 13565 Query 7884 TATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAA 7943 | | | ||| ||||||||| |||| || | || | ||||| | |||||| | Sbjct 13564 TGAATGGGAAATGCTTCATATCGGCTTGTACTTCAGCATCTGCGAACTTGCGTCCGATTA 13505 Query 7944 GACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGT 8003 |||||| ||||| || || ||||| | ||||||||||| ||||||||| || || | Sbjct 13504 AACGCTTGGCATCGAAGACGGTGTTATATGGGTTCATGGCGACTTGGTTCTTGGCGGCAT 13445 Query 8004 CCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCC 8063 | ||||| | ||| ||| || || || || || ||| |||| || || ||||| || | Sbjct 13444 CTCCGATCAAACGCTCAGTA---TCGGTGAAAGCAACGAACGAAGGAGTGGTTCGGTTTC 13388 Query 8064 CTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACG 8123 ||||||| || ||||||||||| | | ||| | | ||| || || || || || | Sbjct 13387 CTTGGTCATTGGCAATAATTTCGATTCTGTCATCTCTGAAGATACCTACACAAGAGTAGG 13328 Query 8124 TTGTTCCTAAATCAATACCGAT 8145 | || || ||||| |||||||| Sbjct 13327 TGGTACCCAAATCGATACCGAT 13306 Score = 149 bits (164), Expect = 8e-31 Identities = 531/828 (64%), Gaps = 3/828 (0%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || | || ||||| || || || | ||| || || || || || || Sbjct 14955 TTCATCCTCGGCCTTGTACTTCTCAGCTTCCGCCAACATACGCTCGATCTCCTCCTTGGA 14896 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 || | ||||| || || || || |||||| | ||| || || | |||| || Sbjct 14895 CAAGCGACCCTTGTCGTTGGTGATGACAATCTTGTTGGACTTTCCGGTACCCTTCTCGAG 14836 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 |||| || |||| ||||| || ||||||| |||||| | || | ||||| || Sbjct 14835 AGCAGAGACGTTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATTTGAGGAAC 14776 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | || || | ||| ||||| || | || ||| |||| | || |||| ||| | Sbjct 14775 ACCACGGGGCGCAGGTGGGATACCAGTAAGTTCGAATTTACCCATCAAGTTGTTGTCCTT 14716 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867 | | ||| ||||| || | |||| ||| ||| ||||||| || || Sbjct 14715 GGTGCGTTGACGCTCACCCTCGAAAACTTGAATGAGCACACCAGGTTGGTTGTCGGAGAA 14656 Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 || ||||| | || |||||| | || || || || |||| ||||| | | ||| Sbjct 14655 GGTGGAGAAAACTTCGGATTTCTTGGTAGGGATAGTGGTGTTTCGGGGAATGAGCTTGGT 14596 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| ||||| ||| || | || ||||||| || | || || | || | | Sbjct 14595 CATCTGTCCACCAGCAGTCTCAATACCGAGAGACAACGGCGCGACATCGAGAAGAAGGAT 14536 Query 6988 GTCTTGAACAGATTCG--TTCCCT-TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCC 7044 || | || | | | | ||||| | | |||||||| ||||| | || || Sbjct 14535 CTCGTTGGTGGACTTGGATGAAGTGTCACCAGAGAGAATGGCGGCCTGGACGGCAGCACC 14476 Query 7045 GTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATC 7104 |||||| || |||||||| ||||| || | || || | || |||||||| || || || Sbjct 14475 GTATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTC 14416 Query 7105 CGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATT 7164 | | | | || || ||||| || || || ||||| || | ||||| || | Sbjct 14415 GGTAATGAGCTTCTGGATACGTGGGATACGGGTGGAACCACCAACGAGGACGATCTCGTG 14356 Query 7165 CACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTT 7224 ||| | ||||| || ||||| | || || ||||| || || Sbjct 14355 AACTCTGGATTTGTCAATCTTGGCATCAGCGAGGACACGGTCGACTGGGGTGGTAGTGGA 14296 Query 7225 ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284 ||||| | |||| || |||||||||||||| |||||||| ||||| || ||||| || Sbjct 14295 TCGGAAGAGGTCCTGGCAAAGTTCCTCAAAACGAGCACGGGTGATGGAAGTGTAGAAGTC 14236 Query 7285 AACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCG 7344 | || ||| | | ||| || ||||| |||| || || || | || || | || || Sbjct 14235 GATACCCTCGAAGAGCGAGTCGATTTCGATGGAGGTCTGGGCAGAAGATGAGAGGGTACG 14176 Query 7345 CTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTT 7392 ||| || ||||| || || || || | ||||||||| ||||| | ||| Sbjct 14175 CTTGGCACGCTCGCATGCTGTGCGGAGACGACGAAGAGCACGAGCGTT 14128 >seq1669 Length=9415 Score = 138 bits (152), Expect = 1e-27 Identities = 210/298 (70%), Gaps = 11/298 (4%) Strand=Plus/Minus Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521 ||| | ||| |||||||| || || || || || || || || |||| ||| |||| Sbjct 3346 ATCCTGACCTCCCAAGTGAGTGTCACCAGCAGTAGCCTTAACGGTGAAGACACCACCTTG 3287 Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGT 7581 |||||| || | |||||||| || || |||||||| || ||| | || || ||||| Sbjct 3286 AATGTTCAAGAGGGAAACATCGAAAGTTCCACCACCGAGATCATAGATAAGAACGTT--- 3230 Query 7582 ATCG-TCGTCTTTGTTCTT------ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 ||| || | ||| |||| | |||||||||| ||||| || || || || |||| Sbjct 3229 -TCGCTCCTTGTTGGTCTTTCCAGCACCGAGACCGTATGCGATGGCAGCAGCGGTAGGTT 3171 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || || ||||| ||| ||| ||||||||||| | | ||||| || || ||||| | Sbjct 3170 CGTTGATGATACGGAGAACGTTGAGGCCAGCAATGGCACCAGCATCCTTGGTAGCTTGAC 3111 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 | || ||||| |||||||| || || || | ||| || | | || ||||| || Sbjct 3110 GCTGGTTGTCGTTGAAGTAGGCTGGAACAGTGATGACGGCCTTGGAAACCTTCTTGCC 3053 >seq10763 Length=10051 Score = 127 bits (140), Expect = 3e-24 Identities = 344/523 (66%), Gaps = 15/523 (3%) Strand=Plus/Minus Query 105558 TTCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCT 105617 |||||| || |||||||| | |||||||||||| | ||| |||||||||| || || Sbjct 4935 TTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTG--CT 4878 Query 105618 CG--CCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGC 105675 || | || || | || |||||| || | || | ||| || | | ||| || ||| Sbjct 4877 CGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGC 4818 Query 105676 CATGGTTCTAAATAGACTGC-AATAGACCCTTTACGACGC------CCCGCTTGATTGAC 105728 |||||||| | |||| || ||| ||| | | ||| || |||||| ||| Sbjct 4817 CATGGTTCAAGGTAGATGGCGAATGCACC----AGGGCGCTTGTTACCACCTTGATCGAC 4762 Query 105729 ATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATT 105788 |||||| ||||| ||| | ||||| | ||| |||| ||||| | || ||||||| Sbjct 4761 ATATCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATT 4702 Query 105789 TGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCC 105848 ||| ||| ||| | || | | ||||| | ||| | || | |||||||| || Sbjct 4701 TGTGCCAGCAATGTATGCACCAGTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCC 4642 Query 105849 AGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATC 105908 ||| |||| || ||||| || | ||||| ||||| || || |||||||| Sbjct 4641 AGCATTCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAATACTATC 4582 Query 105909 TTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAA 105968 ||||| | |||| ||||| || || || | ||| | | |||||||| || ||| Sbjct 4581 CTCCTTCATGTCAATGAGGAAGCATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAA 4522 Query 105969 CAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCGTATGTTTCCAGGAC 106028 || ||||| | || || | || | || || | | ||| ||||| | | | Sbjct 4521 GAGTGTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGC 4462 Query 106029 GTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATA 106071 | || ||||| | || |||||||||| || || |||||| Sbjct 4461 GCTCTCGATATCATCACCGTGAATACCAACGGCAACACGCATA 4419 >seq10097 Length=29191 Score = 113 bits (124), Expect = 6e-20 Identities = 198/283 (70%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||||||||| |||||||| ||||| || ||| | |||||||| | |||| Sbjct 18014 ATCGAAATCTTCACCTCCCAAGTGGGTATCACCATTGGTAGACTTGACTTCGA--ATACA 18071 Query 7516 TCCTTC--AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 ||||| ||| | | | || | |||||| ||||| ||||||| || | || | Sbjct 18072 CCCTTCTGAATCTCGAGAACAGAGATATCAAAGGTACCTCCACCCAAATCGTA---GACT 18128 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || | | | ||| || | ||| || ||||| || || | || || || ||||| Sbjct 18129 GCGATGATCTTGTCCTCATCTTTC---TCAAGACCATAGGCAAGTGCAGCTGCGGTTGGC 18185 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTT 7691 || || | | | |||| ||||| ||| ||||| ||| | |||||||| ||||||| Sbjct 18186 TCGTTGACCACTCTAAGAACGTTCAAGCCGGCAAT--TTGACCAGCATCTTTGGTCGCTT 18243 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734 | ||||| || ||||| |||||||| || || || || || || Sbjct 18244 GACGTTGGGAGTCGTTGAAGTAGGCGGGAACAGTGACAACAGC 18286 >seq11222 Length=6659 Score = 91.5 bits (100), Expect = 2e-13 Identities = 219/324 (68%), Gaps = 12/324 (4%) Strand=Plus/Plus Query 11367 GAAACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCACGCTCATCGTTT--GCC 11424 |||||| ||||| || || || | ||||| | || || |||||||||||| ||| Sbjct 3773 GAAACCGTCCATCTCGGTCAAAATCTGGTTCAGAGTAGCCTCTCGCTCATCGTTTCCGCC 3832 Query 11425 GC--AA--ACCCATTCATACTTCTTTTCTTACCAATCGCATCAATTTCATCTATAAAGAT 11480 || || |||| | | || | || ||||| |||||||| ||||| || || || Sbjct 3833 GCCGAATGACCCCCCCTTGCTACGAGATTTTCCAATGGCATCAATCTCATCGATGAATAT 3892 Query 11481 AATACACGGTT--GATTTTCACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCT 11538 ||||| ||| || |||| | ||| | || | |||||| |||| || || Sbjct 3893 GATACAGGGTGTAGACTTTCTAG--CCATGGCGAAAAGATCACGTACTCGAGAAGCACCA 3950 Query 11539 ACGCCTACAAACATTTCAACGAACGATGACCC-CGAACACTGAATAAAAGGAACGGAAGA 11597 || || || ||||||||||| ||| || || | |||||||| || || || || Sbjct 3951 ACACCAACGAACATTTCAACAAACTCAGAACCACTGACACTGAAGAAT-GGCACCCCGGA 4009 Query 11598 TTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCTGTTAATAA 11657 || || || | || |||||||||||| ||||||||||| || || | ||||| Sbjct 4010 CTCGCCGGCCGTCGCTTTTGCTAAAAGTGTCTTACCTGTACCCGGGGGCCCGGATAATAT 4069 Query 11658 TGCACCCCTTGGTATTTTAGCACC 11681 ||||| | || || |||||||| Sbjct 4070 AGCACCGCGAGGAATCTTAGCACC 4093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635039300512680