Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq10370 297 2e-75
seq1669 138 1e-27
seq10763 127 3e-24
seq10097 113 6e-20
seq11222 91.5 2e-13
>seq10370
Length=25047
Score = 297 bits (328), Expect = 2e-75
Identities = 516/742 (70%), Gaps = 10/742 (1%)
Strand=Plus/Minus
Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGA-GAAGTGTCGAAGGAGTCTCGAATCGAAATC 7464
||||| |||||||| || ||||| | || |||||| || || | |||||||||
Sbjct 14039 TTCTTGTGTTTACGCTTGAACTCG-CTGACGAAGTGGTTAACCAGACGGTTATCGAAATC 13981
Query 7465 TTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAAT 7524
|||||||||||||| || || || || || | ||||| || ||||||||| | || ||
Sbjct 13980 CTCACCACCCAAGTGAGTGTCACCTGCAGTGGACTTGACCTCGAAGATACCTTCCTCGAT 13921
Query 7525 GTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTAT 7583
| | | || ||||| || || || ||||| || || || || || || || ||| |
Sbjct 13920 AGTCAGGAGAGAGACATCGAAGGTTCCTCCACCAAGATCGAAGATAAGAACATTACGT-T 13862
Query 7584 CGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAA 7643
| | || ||||| || | |||||| || || || || || || || || || || |
Sbjct 13861 CACCCTCGACCTTCTTGTCCAAACCGTAAGCAATGGCGGCTGCGGTAGGCTCGTTGATGA 13802
Query 7644 TACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAAT 7703
| | ||| ||| || |||||||| | ||||| || || ||||| ||||| ||||
Sbjct 13801 TTCTGAGAACGTTAAGACCAGCAATCAGACCAGCATCCTTTGTGGCTTGACGTTGGGAAT 13742
Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763
|| | ||||| || ||||| || ||||| |||| |||| | |||||| || | |
Sbjct 13741 CGGTGAAGTAAGCTGGGACAGTGACGACAGCGTTGTTGACAGTTCCACCGAGGTAAGCCT 13682
Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823
| || | ||| |||| ||| | ||||||||||| ||||| |||| | || || |
Sbjct 13681 CAGCAGTCTCTCTCATCTTGACCAAGACCATCGATGAGATCTCCTCAGGTGTGAATTGCT 13622
Query 7824 TCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCT 7883
| ||| || || || ||||| ||||| | || || || |||||| | || ||||
Sbjct 13621 TTTGTTCTCCCTTGAACTCAACCTCAATGACTGGCTT-TC--CAGCACGGTCAATGACCT 13565
Query 7884 TATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAA 7943
| | | ||| ||||||||| |||| || | || | ||||| | |||||| |
Sbjct 13564 TGAATGGGAAATGCTTCATATCGGCTTGTACTTCAGCATCTGCGAACTTGCGTCCGATTA 13505
Query 7944 GACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGT 8003
|||||| ||||| || || ||||| | ||||||||||| ||||||||| || || |
Sbjct 13504 AACGCTTGGCATCGAAGACGGTGTTATATGGGTTCATGGCGACTTGGTTCTTGGCGGCAT 13445
Query 8004 CCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCC 8063
| ||||| | ||| ||| || || || || || ||| |||| || || ||||| || |
Sbjct 13444 CTCCGATCAAACGCTCAGTA---TCGGTGAAAGCAACGAACGAAGGAGTGGTTCGGTTTC 13388
Query 8064 CTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACG 8123
||||||| || ||||||||||| | | ||| | | ||| || || || || || |
Sbjct 13387 CTTGGTCATTGGCAATAATTTCGATTCTGTCATCTCTGAAGATACCTACACAAGAGTAGG 13328
Query 8124 TTGTTCCTAAATCAATACCGAT 8145
| || || ||||| ||||||||
Sbjct 13327 TGGTACCCAAATCGATACCGAT 13306
Score = 149 bits (164), Expect = 8e-31
Identities = 531/828 (64%), Gaps = 3/828 (0%)
Strand=Plus/Minus
Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627
|||||| || | || ||||| || || || | ||| || || || || || ||
Sbjct 14955 TTCATCCTCGGCCTTGTACTTCTCAGCTTCCGCCAACATACGCTCGATCTCCTCCTTGGA 14896
Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687
|| | ||||| || || || || |||||| | ||| || || | |||| ||
Sbjct 14895 CAAGCGACCCTTGTCGTTGGTGATGACAATCTTGTTGGACTTTCCGGTACCCTTCTCGAG 14836
Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747
|||| || |||| ||||| || ||||||| |||||| | || | ||||| ||
Sbjct 14835 AGCAGAGACGTTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATTTGAGGAAC 14776
Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807
||| | || || | ||| ||||| || | || ||| |||| | || |||| ||| |
Sbjct 14775 ACCACGGGGCGCAGGTGGGATACCAGTAAGTTCGAATTTACCCATCAAGTTGTTGTCCTT 14716
Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867
| | ||| ||||| || | |||| ||| ||| ||||||| || ||
Sbjct 14715 GGTGCGTTGACGCTCACCCTCGAAAACTTGAATGAGCACACCAGGTTGGTTGTCGGAGAA 14656
Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927
|| ||||| | || |||||| | || || || || |||| ||||| | | |||
Sbjct 14655 GGTGGAGAAAACTTCGGATTTCTTGGTAGGGATAGTGGTGTTTCGGGGAATGAGCTTGGT 14596
Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987
||| ||||| ||| || | || ||||||| || | || || | || | |
Sbjct 14595 CATCTGTCCACCAGCAGTCTCAATACCGAGAGACAACGGCGCGACATCGAGAAGAAGGAT 14536
Query 6988 GTCTTGAACAGATTCG--TTCCCT-TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCC 7044
|| | || | | | | ||||| | | |||||||| ||||| | || ||
Sbjct 14535 CTCGTTGGTGGACTTGGATGAAGTGTCACCAGAGAGAATGGCGGCCTGGACGGCAGCACC 14476
Query 7045 GTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATC 7104
|||||| || |||||||| ||||| || | || || | || |||||||| || || ||
Sbjct 14475 GTATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTC 14416
Query 7105 CGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATT 7164
| | | | || || ||||| || || || ||||| || | ||||| || |
Sbjct 14415 GGTAATGAGCTTCTGGATACGTGGGATACGGGTGGAACCACCAACGAGGACGATCTCGTG 14356
Query 7165 CACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTT 7224
||| | ||||| || ||||| | || || ||||| || ||
Sbjct 14355 AACTCTGGATTTGTCAATCTTGGCATCAGCGAGGACACGGTCGACTGGGGTGGTAGTGGA 14296
Query 7225 ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284
||||| | |||| || |||||||||||||| |||||||| ||||| || ||||| ||
Sbjct 14295 TCGGAAGAGGTCCTGGCAAAGTTCCTCAAAACGAGCACGGGTGATGGAAGTGTAGAAGTC 14236
Query 7285 AACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCG 7344
| || ||| | | ||| || ||||| |||| || || || | || || | || ||
Sbjct 14235 GATACCCTCGAAGAGCGAGTCGATTTCGATGGAGGTCTGGGCAGAAGATGAGAGGGTACG 14176
Query 7345 CTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTT 7392
||| || ||||| || || || || | ||||||||| ||||| | |||
Sbjct 14175 CTTGGCACGCTCGCATGCTGTGCGGAGACGACGAAGAGCACGAGCGTT 14128
>seq1669
Length=9415
Score = 138 bits (152), Expect = 1e-27
Identities = 210/298 (70%), Gaps = 11/298 (4%)
Strand=Plus/Minus
Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521
||| | ||| |||||||| || || || || || || || || |||| ||| ||||
Sbjct 3346 ATCCTGACCTCCCAAGTGAGTGTCACCAGCAGTAGCCTTAACGGTGAAGACACCACCTTG 3287
Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGT 7581
|||||| || | |||||||| || || |||||||| || ||| | || || |||||
Sbjct 3286 AATGTTCAAGAGGGAAACATCGAAAGTTCCACCACCGAGATCATAGATAAGAACGTT--- 3230
Query 7582 ATCG-TCGTCTTTGTTCTT------ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
||| || | ||| |||| | |||||||||| ||||| || || || || ||||
Sbjct 3229 -TCGCTCCTTGTTGGTCTTTCCAGCACCGAGACCGTATGCGATGGCAGCAGCGGTAGGTT 3171
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694
| || || ||||| ||| ||| ||||||||||| | | ||||| || || ||||| |
Sbjct 3170 CGTTGATGATACGGAGAACGTTGAGGCCAGCAATGGCACCAGCATCCTTGGTAGCTTGAC 3111
Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752
| || ||||| |||||||| || || || | ||| || | | || ||||| ||
Sbjct 3110 GCTGGTTGTCGTTGAAGTAGGCTGGAACAGTGATGACGGCCTTGGAAACCTTCTTGCC 3053
>seq10763
Length=10051
Score = 127 bits (140), Expect = 3e-24
Identities = 344/523 (66%), Gaps = 15/523 (3%)
Strand=Plus/Minus
Query 105558 TTCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCT 105617
|||||| || |||||||| | |||||||||||| | ||| |||||||||| || ||
Sbjct 4935 TTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTG--CT 4878
Query 105618 CG--CCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGC 105675
|| | || || | || |||||| || | || | ||| || | | ||| || |||
Sbjct 4877 CGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGC 4818
Query 105676 CATGGTTCTAAATAGACTGC-AATAGACCCTTTACGACGC------CCCGCTTGATTGAC 105728
|||||||| | |||| || ||| ||| | | ||| || |||||| |||
Sbjct 4817 CATGGTTCAAGGTAGATGGCGAATGCACC----AGGGCGCTTGTTACCACCTTGATCGAC 4762
Query 105729 ATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATT 105788
|||||| ||||| ||| | ||||| | ||| |||| ||||| | || |||||||
Sbjct 4761 ATATCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATT 4702
Query 105789 TGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCC 105848
||| ||| ||| | || | | ||||| | ||| | || | |||||||| ||
Sbjct 4701 TGTGCCAGCAATGTATGCACCAGTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCC 4642
Query 105849 AGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATC 105908
||| |||| || ||||| || | ||||| ||||| || || ||||||||
Sbjct 4641 AGCATTCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAATACTATC 4582
Query 105909 TTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAA 105968
||||| | |||| ||||| || || || | ||| | | |||||||| || |||
Sbjct 4581 CTCCTTCATGTCAATGAGGAAGCATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAA 4522
Query 105969 CAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCGTATGTTTCCAGGAC 106028
|| ||||| | || || | || | || || | | ||| ||||| | | |
Sbjct 4521 GAGTGTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGC 4462
Query 106029 GTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATA 106071
| || ||||| | || |||||||||| || || ||||||
Sbjct 4461 GCTCTCGATATCATCACCGTGAATACCAACGGCAACACGCATA 4419
>seq10097
Length=29191
Score = 113 bits (124), Expect = 6e-20
Identities = 198/283 (70%), Gaps = 14/283 (5%)
Strand=Plus/Plus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||||||||||||||| |||||||| ||||| || ||| | |||||||| | ||||
Sbjct 18014 ATCGAAATCTTCACCTCCCAAGTGGGTATCACCATTGGTAGACTTGACTTCGA--ATACA 18071
Query 7516 TCCTTC--AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573
||||| ||| | | | || | |||||| ||||| ||||||| || | || |
Sbjct 18072 CCCTTCTGAATCTCGAGAACAGAGATATCAAAGGTACCTCCACCCAAATCGTA---GACT 18128
Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633
|| | | | ||| || | ||| || ||||| || || | || || || |||||
Sbjct 18129 GCGATGATCTTGTCCTCATCTTTC---TCAAGACCATAGGCAAGTGCAGCTGCGGTTGGC 18185
Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTT 7691
|| || | | | |||| ||||| ||| ||||| ||| | |||||||| |||||||
Sbjct 18186 TCGTTGACCACTCTAAGAACGTTCAAGCCGGCAAT--TTGACCAGCATCTTTGGTCGCTT 18243
Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734
| ||||| || ||||| |||||||| || || || || || ||
Sbjct 18244 GACGTTGGGAGTCGTTGAAGTAGGCGGGAACAGTGACAACAGC 18286
>seq11222
Length=6659
Score = 91.5 bits (100), Expect = 2e-13
Identities = 219/324 (68%), Gaps = 12/324 (4%)
Strand=Plus/Plus
Query 11367 GAAACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCACGCTCATCGTTT--GCC 11424
|||||| ||||| || || || | ||||| | || || |||||||||||| |||
Sbjct 3773 GAAACCGTCCATCTCGGTCAAAATCTGGTTCAGAGTAGCCTCTCGCTCATCGTTTCCGCC 3832
Query 11425 GC--AA--ACCCATTCATACTTCTTTTCTTACCAATCGCATCAATTTCATCTATAAAGAT 11480
|| || |||| | | || | || ||||| |||||||| ||||| || || ||
Sbjct 3833 GCCGAATGACCCCCCCTTGCTACGAGATTTTCCAATGGCATCAATCTCATCGATGAATAT 3892
Query 11481 AATACACGGTT--GATTTTCACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCT 11538
||||| ||| || |||| | ||| | || | |||||| |||| || ||
Sbjct 3893 GATACAGGGTGTAGACTTTCTAG--CCATGGCGAAAAGATCACGTACTCGAGAAGCACCA 3950
Query 11539 ACGCCTACAAACATTTCAACGAACGATGACCC-CGAACACTGAATAAAAGGAACGGAAGA 11597
|| || || ||||||||||| ||| || || | |||||||| || || || ||
Sbjct 3951 ACACCAACGAACATTTCAACAAACTCAGAACCACTGACACTGAAGAAT-GGCACCCCGGA 4009
Query 11598 TTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCTGTTAATAA 11657
|| || || | || |||||||||||| ||||||||||| || || | |||||
Sbjct 4010 CTCGCCGGCCGTCGCTTTTGCTAAAAGTGTCTTACCTGTACCCGGGGGCCCGGATAATAT 4069
Query 11658 TGCACCCCTTGGTATTTTAGCACC 11681
||||| | || || ||||||||
Sbjct 4070 AGCACCGCGAGGAATCTTAGCACC 4093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635039300512680
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