Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq10763 257 2e-63 seq10338 143 3e-29 seq5810 95.1 2e-14 >seq10763 Length=10051 Score = 257 bits (284), Expect = 2e-63 Identities = 1093/1699 (64%), Gaps = 61/1699 (4%) Strand=Plus/Plus Query 111711 CACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTC 111770 ||||| | ||||| |||||| ||| ||||||||| | ||||| | || || ||| Sbjct 4504 CACGCTTCTCCAACACTCTTCTCCGCGGGTACACCACAAGCCCAACTTTCTTCATGCTTC 4563 Query 111771 CTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCC 111830 || |||| | ||||||||| || |||| ||||| | ||| | | |||||| Sbjct 4564 CTCATTGACATGAAGGAGGATAGTATTGATGGAATTTATGATACTTTGAAGATTTGTGCC 4623 Query 111831 CAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCAT-GATGTCAGAGCCAACAA 111889 || || ||| ||||| ||||| || | ||||||| || || | || | | Sbjct 4624 ATGATTTCTAAGAATGCTGGAGGTATTGGTCTCAACATCCACAGAATTC-GTGCTA-CTG 4681 Query 111890 GT-CTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTAT 111948 || | ||| || |||||||| | || | ||||| |||| |||||||| || | Sbjct 4682 GTGCATACATTGCTGGCACAAATGGAAATTCTAACGGTATCGTTCCTATGCTTCGAGTTT 4741 Query 111949 TTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCG 112002 | ||| || || | ||||| | |||| ||| | |||| | || ||| Sbjct 4742 TCAACAATACCGCTAGATATGTCGATCAAGGTGG---TAACAAGCGCCCTGGTGCATTCG 4798 Query 112003 CAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACC 112062 | |||| ||||| |||||||| |||||| || | ||||| | || | || || | Sbjct 4799 CCATCTACCTTGAACCATGGCATGCGGATGTCTTTGAGTTTTTGGATCTCCGAAAGAATC 4858 Query 112063 AAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCT 112122 | || | ||||| | || ||||| ||||| | || ||||||||||||||||||| Sbjct 4859 ATGGAAAGGAGGAAGTTCGAGCACGCGACCTCTTTTATGCCCTCTGGATTCCAGATCTCT 4918 Query 112123 TCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCG 112182 |||||||| | ||||| ||| || ||||| | ||| | || || || | || | Sbjct 4919 TCATGAAGCGTGTTGAAAAGAACGGAGATTGGACACTCATGTGCCCCAACGAATGTCCTG 4978 Query 112183 GTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAA 112242 | | | |||| | ||||| ||||||||||| || || |||||| || || Sbjct 4979 GCTTGGCTGATGTCTATGGTGATGAGTTTGAAGCTCTTTATGAGGGTTACGAGAAACAAG 5038 Query 112243 GT--CGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCA 112300 || || || | ||| | ||| | | ||| | |||| ||| || | || Sbjct 5039 GTAAAGGCCG--TAAGACTATCAAGGCTCAAAAGCTTTGGTATTCTATCCTCGAGGCACA 5096 Query 112301 AACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCA 112360 || ||||| || | || | |||||||||||||| || || ||| ||||||| ||||| Sbjct 5097 GACTGAGACAGGAAACCCTTTCATGCTTTACAAAGATGCTTGCAACAAAAAGAGCAATCA 5156 Query 112361 AAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGA 112420 ||||||| | || ||| || |||||| | || || |||||| | |||| | | Sbjct 5157 AAAGAATCTCGGCACAATCCGCAGCTCCAACTTGTGCACGGAAATCGTCGAATACTCTGC 5216 Query 112421 CAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCC 112480 |||||| ||| ||||| | || || || |||||||| | | ||| | | Sbjct 5217 ACCTGATGAGGTTGCTTGCTGTAATTTGGCTTCTATTGCTCTCCCAACCTTTGTCAA--C 5274 Query 112481 AGAGACAAAG--ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAA 112538 | | | | | || | ||||| |||| || ||||| || || ||| | | Sbjct 5275 ATGGCCGAGGGAACTTATGATTTCCAAAAGCTTCACGAGGTCGTTCAAGTTGTTGTCAGA 5334 Query 112539 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAAT 112598 ||| | |||| |||| |||| |||| || ||||| || || | | | ||| Sbjct 5335 AACTTGAACAAGATTATCGATATCAATTACTATCCCGTCGAAGAAGCCAGAAGAAGCAAT 5394 Query 112599 ATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTG- 112657 | | || || || |||| | | ||||| |||||||| || |||| | ||||| | Sbjct 5395 TTCCGTCATCGACCTATTGCTGTTGGTGTTCAAGGTCTTGCTGATG----CCTTCTTGGC 5450 Query 112658 TCGCC----ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGA 112713 || || || |||| ||||| |||||||||| | |||| | || ||||||| Sbjct 5451 TCTCCGTTTAC-CATTCGATTCACCCGAAGCGAAGCATCTCAACATCCAAATCTTTGAGA 5509 Query 112714 CAATGTATCACGCCGCTCTTGAGGCGA---GTTCGGAGTTGGCAGAGGTTGATGGTCCAT 112770 | || || |||| ||| |||| | |||| || | || ||| || |||| Sbjct 5510 CCATCTACCACGGTGCT-TTGACTTCATCTGTTC--AGATAGCCAAGGAATTAGGCCCAT 5566 Query 112771 ATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAA 112829 | || | | ||| || ||||||| || |||||| | |||||||| ||||||||||| Sbjct 5567 ACGAGTCATATGAAGGATCTCCAGTCTC-CAAGGGTGAGCTTCAATATGATATGTGGGGT 5625 Query 112830 GGTGAGACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGT 112889 | | | | | || | || ||||| |||||||| || |||||| | | ||| Sbjct 5626 GTTACTCCTACGGATCTTTGGGATTGGGATTCTCTCAAGCAATCTATCAAGCAACATGGT 5685 Query 112890 CTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 112949 | || || ||| | | | || || |||||||| ||| ||| | ||||| | ||| Sbjct 5686 ATCCGGAATAGTTTGCTTGTTGCTCCTATGCCAACTGCCAGCACATCTCAAATTCTCGGT 5745 Query 112950 AATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGA-GAAGAACCCTCGCGGG 113008 |||||||| || || || ||||| | ||||| || || | | | | || || Sbjct 5746 TTCAATGAATGTTTCGAGCCATACACTTCCAACATTTA-CTCACGCCGTGTGTTGGCCGG 5804 Query 113009 AGAGTTTGTGATTGTCAAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTG 113065 ||||| | || ||| || ||| |||| || || || || || || Sbjct 5805 TGAGTTCCAAGTCGTTAACCCATGGCTTCTTAAGGATTTGGTC---GACATGGGACTTTG 5861 Query 113066 GTCCAAGGATATGAAGGATC---TCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTG 113121 ||| | | |||||| ||| |||| | ||| ||||||||||||||||||||| Sbjct 5862 GTCTGATAACATGAAGAATCGTATCATCGCTGA----TGGTGGTTCCATTCAAAATATTC 5917 Query 113122 TGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGG 113181 | ||||||| || ||||| | ||| || |||||||||||| | || | Sbjct 5918 CCAACATTCCAGCCGAGATTAAAGCTCTCTACAAGACCGTTTGGGAAATC--TCTCAACG 5975 Query 113182 ATGTCATTG---ACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA 113238 | ||||| | ||||||||||| |||||| |||||||||||| |||| |||| Sbjct 5976 A-AACATTGTTCAAATGGCCGCAGACCGTGGTGCTTTCATTGATCAATCTCAATCGATGA 6034 Query 113239 ATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGA 113298 | | |||| | || || ||| |||| || |||| ||||| | | |||| Sbjct 6035 ACATTCACATGAAGGACCCTACAATGGGCAAGATCACTTCCATGCATTTCGCTGGATGGA 6094 Query 113299 AGAAGGGTCTCAAAACGGGGATGTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTC 113358 | ||||||||| || || ||||| || ||||| ||| ||| || ||||||| Sbjct 6095 AATTGGGTCTCAAGACTGGAATGTACTATCTCCGTACTATGGCTGCTTCGGCACCAATTC 6154 Query 113359 AGTTCAGTCTTGAACCAGA 113377 | |||| | | || | ||| Sbjct 6155 AATTCACTGTCGATCAAGA 6173 >seq10338 Length=29807 Score = 143 bits (158), Expect = 3e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 102166 ||||| || |||||| | ||||| || ||||||||| | | ||| | | |||||| Sbjct 12918 ACAGTCCCTTGTATTAAGAAGAAGGCCGATTGGGCTGTTAGATGGATCCAAGACAAAGAA 12977 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | | | |||||| | || ||| ||||||| || |||||| |||||||||||| ||| Sbjct 12978 TC-TACATTTGCTCAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGG 13036 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 ||| ||| | |||| | |||||||||||||| ||| | ||| | ||||| ||||| Sbjct 13037 TTCATTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTC 13096 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 102319 ||||||||| ||||| ||||||||||| || || Sbjct 13097 CAACGAGCTCATCTCCCGTGACGAGGGTCTTCA 13129 >seq5810 Length=707 Score = 95.1 bits (104), Expect = 2e-14 Identities = 184/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGAC 112258 || |||||||| || ||||| ||| | ||||||||| |||| | || ||| | ||| Sbjct 401 GGCGAGGAGTTCGATGCCCTTTACGCCAAGTACGAGCAAGAGGGCCGTGGCCGCAA-GAC 459 Query 112259 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | ||| | | ||| | || |||||| || | || ||||||||||||| || Sbjct 460 CATCAAGGCTCAGAAACTCTGGTATGCCATTCTCGAGGCCCAGACCGAGACTGGTAACCC 519 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | ||||| ||||| || ||||| ||| |||||||| || ||||| ||||| || Sbjct 520 CTTCATGCTCTACAAGGATGCCTGCAACAGGAAGAGTAACCAGAAGAACCTGGGTACTAT 579 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 || || ||||| || || || ||| | || | | | | |||||| |||||| Sbjct 580 TCGCAGCTCTAACCTGTGCACTGAGATCATTGAGTACAGTGCCCCTGATGAGGTGGCTGT 639 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCA 112467 || ||||| || || |||| ||||||| Sbjct 640 TTGCAACCTGGCTTCCCTCGCCCTCCCCA 668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620651018959440