Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 257 2e-63
seq10338 143 3e-29
seq5810 95.1 2e-14
>seq10763
Length=10051
Score = 257 bits (284), Expect = 2e-63
Identities = 1093/1699 (64%), Gaps = 61/1699 (4%)
Strand=Plus/Plus
Query 111711 CACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTC 111770
||||| | ||||| |||||| ||| ||||||||| | ||||| | || || |||
Sbjct 4504 CACGCTTCTCCAACACTCTTCTCCGCGGGTACACCACAAGCCCAACTTTCTTCATGCTTC 4563
Query 111771 CTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCC 111830
|| |||| | ||||||||| || |||| ||||| | ||| | | ||||||
Sbjct 4564 CTCATTGACATGAAGGAGGATAGTATTGATGGAATTTATGATACTTTGAAGATTTGTGCC 4623
Query 111831 CAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCAT-GATGTCAGAGCCAACAA 111889
|| || ||| ||||| ||||| || | ||||||| || || | || | |
Sbjct 4624 ATGATTTCTAAGAATGCTGGAGGTATTGGTCTCAACATCCACAGAATTC-GTGCTA-CTG 4681
Query 111890 GT-CTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTAT 111948
|| | ||| || |||||||| | || | ||||| |||| |||||||| || |
Sbjct 4682 GTGCATACATTGCTGGCACAAATGGAAATTCTAACGGTATCGTTCCTATGCTTCGAGTTT 4741
Query 111949 TTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCG 112002
| ||| || || | ||||| | |||| ||| | |||| | || |||
Sbjct 4742 TCAACAATACCGCTAGATATGTCGATCAAGGTGG---TAACAAGCGCCCTGGTGCATTCG 4798
Query 112003 CAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACC 112062
| |||| ||||| |||||||| |||||| || | ||||| | || | || || |
Sbjct 4799 CCATCTACCTTGAACCATGGCATGCGGATGTCTTTGAGTTTTTGGATCTCCGAAAGAATC 4858
Query 112063 AAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCT 112122
| || | ||||| | || ||||| ||||| | || |||||||||||||||||||
Sbjct 4859 ATGGAAAGGAGGAAGTTCGAGCACGCGACCTCTTTTATGCCCTCTGGATTCCAGATCTCT 4918
Query 112123 TCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCG 112182
|||||||| | ||||| ||| || ||||| | ||| | || || || | || |
Sbjct 4919 TCATGAAGCGTGTTGAAAAGAACGGAGATTGGACACTCATGTGCCCCAACGAATGTCCTG 4978
Query 112183 GTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAA 112242
| | | |||| | ||||| ||||||||||| || || |||||| || ||
Sbjct 4979 GCTTGGCTGATGTCTATGGTGATGAGTTTGAAGCTCTTTATGAGGGTTACGAGAAACAAG 5038
Query 112243 GT--CGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCA 112300
|| || || | ||| | ||| | | ||| | |||| ||| || | ||
Sbjct 5039 GTAAAGGCCG--TAAGACTATCAAGGCTCAAAAGCTTTGGTATTCTATCCTCGAGGCACA 5096
Query 112301 AACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCA 112360
|| ||||| || | || | |||||||||||||| || || ||| ||||||| |||||
Sbjct 5097 GACTGAGACAGGAAACCCTTTCATGCTTTACAAAGATGCTTGCAACAAAAAGAGCAATCA 5156
Query 112361 AAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGA 112420
||||||| | || ||| || |||||| | || || |||||| | |||| | |
Sbjct 5157 AAAGAATCTCGGCACAATCCGCAGCTCCAACTTGTGCACGGAAATCGTCGAATACTCTGC 5216
Query 112421 CAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCC 112480
|||||| ||| ||||| | || || || |||||||| | | ||| | |
Sbjct 5217 ACCTGATGAGGTTGCTTGCTGTAATTTGGCTTCTATTGCTCTCCCAACCTTTGTCAA--C 5274
Query 112481 AGAGACAAAG--ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAA 112538
| | | | | || | ||||| |||| || ||||| || || ||| | |
Sbjct 5275 ATGGCCGAGGGAACTTATGATTTCCAAAAGCTTCACGAGGTCGTTCAAGTTGTTGTCAGA 5334
Query 112539 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAAT 112598
||| | |||| |||| |||| |||| || ||||| || || | | | |||
Sbjct 5335 AACTTGAACAAGATTATCGATATCAATTACTATCCCGTCGAAGAAGCCAGAAGAAGCAAT 5394
Query 112599 ATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTG- 112657
| | || || || |||| | | ||||| |||||||| || |||| | ||||| |
Sbjct 5395 TTCCGTCATCGACCTATTGCTGTTGGTGTTCAAGGTCTTGCTGATG----CCTTCTTGGC 5450
Query 112658 TCGCC----ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGA 112713
|| || || |||| ||||| |||||||||| | |||| | || |||||||
Sbjct 5451 TCTCCGTTTAC-CATTCGATTCACCCGAAGCGAAGCATCTCAACATCCAAATCTTTGAGA 5509
Query 112714 CAATGTATCACGCCGCTCTTGAGGCGA---GTTCGGAGTTGGCAGAGGTTGATGGTCCAT 112770
| || || |||| ||| |||| | |||| || | || ||| || ||||
Sbjct 5510 CCATCTACCACGGTGCT-TTGACTTCATCTGTTC--AGATAGCCAAGGAATTAGGCCCAT 5566
Query 112771 ATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAA 112829
| || | | ||| || ||||||| || |||||| | |||||||| |||||||||||
Sbjct 5567 ACGAGTCATATGAAGGATCTCCAGTCTC-CAAGGGTGAGCTTCAATATGATATGTGGGGT 5625
Query 112830 GGTGAGACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGT 112889
| | | | | || | || ||||| |||||||| || |||||| | | |||
Sbjct 5626 GTTACTCCTACGGATCTTTGGGATTGGGATTCTCTCAAGCAATCTATCAAGCAACATGGT 5685
Query 112890 CTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 112949
| || || ||| | | | || || |||||||| ||| ||| | ||||| | |||
Sbjct 5686 ATCCGGAATAGTTTGCTTGTTGCTCCTATGCCAACTGCCAGCACATCTCAAATTCTCGGT 5745
Query 112950 AATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGA-GAAGAACCCTCGCGGG 113008
|||||||| || || || ||||| | ||||| || || | | | | || ||
Sbjct 5746 TTCAATGAATGTTTCGAGCCATACACTTCCAACATTTA-CTCACGCCGTGTGTTGGCCGG 5804
Query 113009 AGAGTTTGTGATTGTCAAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTG 113065
||||| | || ||| || ||| |||| || || || || || ||
Sbjct 5805 TGAGTTCCAAGTCGTTAACCCATGGCTTCTTAAGGATTTGGTC---GACATGGGACTTTG 5861
Query 113066 GTCCAAGGATATGAAGGATC---TCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTG 113121
||| | | |||||| ||| |||| | ||| |||||||||||||||||||||
Sbjct 5862 GTCTGATAACATGAAGAATCGTATCATCGCTGA----TGGTGGTTCCATTCAAAATATTC 5917
Query 113122 TGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGG 113181
| ||||||| || ||||| | ||| || |||||||||||| | || |
Sbjct 5918 CCAACATTCCAGCCGAGATTAAAGCTCTCTACAAGACCGTTTGGGAAATC--TCTCAACG 5975
Query 113182 ATGTCATTG---ACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA 113238
| ||||| | ||||||||||| |||||| |||||||||||| |||| ||||
Sbjct 5976 A-AACATTGTTCAAATGGCCGCAGACCGTGGTGCTTTCATTGATCAATCTCAATCGATGA 6034
Query 113239 ATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGA 113298
| | |||| | || || ||| |||| || |||| ||||| | | ||||
Sbjct 6035 ACATTCACATGAAGGACCCTACAATGGGCAAGATCACTTCCATGCATTTCGCTGGATGGA 6094
Query 113299 AGAAGGGTCTCAAAACGGGGATGTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTC 113358
| ||||||||| || || ||||| || ||||| ||| ||| || |||||||
Sbjct 6095 AATTGGGTCTCAAGACTGGAATGTACTATCTCCGTACTATGGCTGCTTCGGCACCAATTC 6154
Query 113359 AGTTCAGTCTTGAACCAGA 113377
| |||| | | || | |||
Sbjct 6155 AATTCACTGTCGATCAAGA 6173
>seq10338
Length=29807
Score = 143 bits (158), Expect = 3e-29
Identities = 161/213 (76%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 102166
||||| || |||||| | ||||| || ||||||||| | | ||| | | ||||||
Sbjct 12918 ACAGTCCCTTGTATTAAGAAGAAGGCCGATTGGGCTGTTAGATGGATCCAAGACAAAGAA 12977
Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226
| | | |||||| | || ||| ||||||| || |||||| |||||||||||| |||
Sbjct 12978 TC-TACATTTGCTCAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGG 13036
Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286
||| ||| | |||| | |||||||||||||| ||| | ||| | ||||| |||||
Sbjct 13037 TTCATTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTC 13096
Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 102319
||||||||| ||||| ||||||||||| || ||
Sbjct 13097 CAACGAGCTCATCTCCCGTGACGAGGGTCTTCA 13129
>seq5810
Length=707
Score = 95.1 bits (104), Expect = 2e-14
Identities = 184/269 (68%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGAC 112258
|| |||||||| || ||||| ||| | ||||||||| |||| | || ||| | |||
Sbjct 401 GGCGAGGAGTTCGATGCCCTTTACGCCAAGTACGAGCAAGAGGGCCGTGGCCGCAA-GAC 459
Query 112259 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318
| ||| | | ||| | || |||||| || | || ||||||||||||| ||
Sbjct 460 CATCAAGGCTCAGAAACTCTGGTATGCCATTCTCGAGGCCCAGACCGAGACTGGTAACCC 519
Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378
| ||||| ||||| || ||||| ||| |||||||| || ||||| ||||| ||
Sbjct 520 CTTCATGCTCTACAAGGATGCCTGCAACAGGAAGAGTAACCAGAAGAACCTGGGTACTAT 579
Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438
|| || ||||| || || || ||| | || | | | | |||||| ||||||
Sbjct 580 TCGCAGCTCTAACCTGTGCACTGAGATCATTGAGTACAGTGCCCCTGATGAGGTGGCTGT 639
Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCA 112467
|| ||||| || || |||| |||||||
Sbjct 640 TTGCAACCTGGCTTCCCTCGCCCTCCCCA 668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620651018959440
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