Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq10763 158 1e-33 >seq10763 Length=10051 Score = 158 bits (174), Expect = 1e-33 Identities = 610/946 (64%), Gaps = 23/946 (2%) Strand=Plus/Minus Query 110269 TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG 110328 |||||| | | |||||||||||||| || | ||| || || | ||| || | Sbjct 5273 TTGACAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCA 5214 Query 110329 GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGA 110388 | |||||| | |||||||| ||||||||||| || || || | ||||| ||| Sbjct 5213 GAGTATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGA 5154 Query 110389 TTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGT 110448 || || |||||| ||||| || || |||||| | ||| | || || || |||||| Sbjct 5153 TTGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGT 5094 Query 110449 GACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAG--CGAGACCTT 110506 | || ||| || | | ||| | | || || ||| | | | | ||||| Sbjct 5093 GCCTCGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGT--CTTACGGCCTTTACCTT 5036 Query 110507 CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566 | |||||| || | | ||||| || | || || ||||||| | | || Sbjct 5035 GTTTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCA-AGCCA 4977 Query 110567 TCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625 | || || ||| || | ||| | ||||| ||| || ||||| | ||||||||| Sbjct 4976 GGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAG 4917 Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGG 110685 || || |||||||| | || | || ||||| || ||| | || || | || || Sbjct 4916 AGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGA 4857 Query 110686 TTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCG 110745 || || || |||||||| || | || ||||| ||||||||||| || |||| ||| Sbjct 4856 TTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCG 4797 Query 110746 ATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAG 110799 | | || | | || ||| | || | ||||| | || || ||||| Sbjct 4796 AATGCACC---AGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAA 4740 Query 110800 ACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTT 110858 || | |||||||||| || || | || | |||||||| || ||| | || || Sbjct 4739 ACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACC- 4681 Query 110859 ATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGC 110918 | | |||||||| |||||| | | ||||||||| || || |||| ||| || Sbjct 4680 AGTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGC 4621 Query 110919 ACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAA 110977 ||| ||| | | ||| ||||||| |||||||| ||| |||| || |||| || | Sbjct 4620 ACAAATCT-TCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGA 4562 Query 110978 AGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAA 111037 |||| ||||| | || | | || || ||||| ||||||||| || | || || Sbjct 4561 AGCATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTG-- 4504 Query 111038 TGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACC 111095 || | || ||| |||||| |||||| || || | ||| | ||| | ||| Sbjct 4503 TGTAAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACC 4444 Query 111096 GTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATC 111155 ||||||||||| |||||| ||||| | ||| | ||| || ||| | |||||||| Sbjct 4443 GTGAATACCAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATC 4384 Query 111156 AACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTAT 111201 | || | ||||| |||| || ||||||| || |||||| Sbjct 4383 GAGGCGGAGGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTAT 4338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588889295370600