Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 158 1e-33
>seq10763
Length=10051
Score = 158 bits (174), Expect = 1e-33
Identities = 610/946 (64%), Gaps = 23/946 (2%)
Strand=Plus/Minus
Query 110269 TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG 110328
|||||| | | |||||||||||||| || | ||| || || | ||| || |
Sbjct 5273 TTGACAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCA 5214
Query 110329 GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGA 110388
| |||||| | |||||||| ||||||||||| || || || | ||||| |||
Sbjct 5213 GAGTATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGA 5154
Query 110389 TTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGT 110448
|| || |||||| ||||| || || |||||| | ||| | || || || ||||||
Sbjct 5153 TTGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGT 5094
Query 110449 GACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAG--CGAGACCTT 110506
| || ||| || | | ||| | | || || ||| | | | | |||||
Sbjct 5093 GCCTCGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGT--CTTACGGCCTTTACCTT 5036
Query 110507 CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566
| |||||| || | | ||||| || | || || ||||||| | | ||
Sbjct 5035 GTTTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCA-AGCCA 4977
Query 110567 TCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625
| || || ||| || | ||| | ||||| ||| || ||||| | |||||||||
Sbjct 4976 GGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAG 4917
Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGG 110685
|| || |||||||| | || | || ||||| || ||| | || || | || ||
Sbjct 4916 AGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGA 4857
Query 110686 TTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCG 110745
|| || || |||||||| || | || ||||| ||||||||||| || |||| |||
Sbjct 4856 TTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCG 4797
Query 110746 ATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAG 110799
| | || | | || ||| | || | ||||| | || || |||||
Sbjct 4796 AATGCACC---AGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAA 4740
Query 110800 ACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTT 110858
|| | |||||||||| || || | || | |||||||| || ||| | || ||
Sbjct 4739 ACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACC- 4681
Query 110859 ATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGC 110918
| | |||||||| |||||| | | ||||||||| || || |||| ||| ||
Sbjct 4680 AGTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGC 4621
Query 110919 ACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAA 110977
||| ||| | | ||| ||||||| |||||||| ||| |||| || |||| || |
Sbjct 4620 ACAAATCT-TCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGA 4562
Query 110978 AGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAA 111037
|||| ||||| | || | | || || ||||| ||||||||| || | || ||
Sbjct 4561 AGCATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTG-- 4504
Query 111038 TGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACC 111095
|| | || ||| |||||| |||||| || || | ||| | ||| | |||
Sbjct 4503 TGTAAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACC 4444
Query 111096 GTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATC 111155
||||||||||| |||||| ||||| | ||| | ||| || ||| | ||||||||
Sbjct 4443 GTGAATACCAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATC 4384
Query 111156 AACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTAT 111201
| || | ||||| |||| || ||||||| || ||||||
Sbjct 4383 GAGGCGGAGGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTAT 4338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588889295370600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |