Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq10763 242 4e-59 seq5810 143 3e-29 seq10051 82.4 9e-11 >seq10763 Length=10051 Score = 242 bits (268), Expect = 4e-59 Identities = 1178/1845 (64%), Gaps = 49/1845 (3%) Strand=Plus/Minus Query 105558 TGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTC 105617 |||| |||||||| || ||| ||| |||||||||||||| || |||||||| | Sbjct 6160 TGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGAC 6101 Query 105618 CTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 105677 | |||||| | | |||||| |||| || |||| ||| || || | |||| Sbjct 6100 CCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATGT 6041 Query 105678 AAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATAT---CAA 105734 || ||||| |||| || |||||||| |||||| | ||| ||||| | ||| Sbjct 6040 GAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACAA 5981 Query 105735 TGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGA 105794 || || || | ||||||||| || || ||||||| || || || |||| | Sbjct 5980 TGTT-TCGTTGAGA--GATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAA 5924 Query 105795 TATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGG 105854 | | | ||||||||||| ||||| || | || || ||| |||||| | | | Sbjct 5923 TGTTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAG 5864 Query 105855 ACCAAAGACCAATCTTCTTGAGATCATTGACGAG--ATGCTTGTTGACAATCACAAACTC 105912 ||||||| || || | | ||| || | || ||| ||| || | ||||| Sbjct 5863 ACCAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGG--GTTAACGACTTGGAACTC 5806 Query 105913 TCCCGCGAGGGTTCTTC-TCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTAT 105971 || || | | | | || || ||||| | ||||| || || || |||||||| Sbjct 5805 ACCGGCCAACACACGGCGTGAG-TAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGA 5747 Query 105972 TACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAA 106031 ||| | ||||| | ||| ||| |||||||| || || | | | ||| || || | Sbjct 5746 AACCGAGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGA 5687 Query 106032 GACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTC 106089 ||| | || |||||| || ||||||| |||||| || | || | | || | Sbjct 5686 TACCATGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAA-GATCCGTAGGAGTA 5628 Query 106090 ACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAACCCTCAAATGTC 106147 || ||||||||||| |||||||| | ||||||| ||| ||||| || ||| ||| | Sbjct 5627 ACAC-CCCACATATCATATTGAAGCTCACCCTTGGAGACT--GGAGATCCTTCATATGAC 5571 Query 106148 TCATAGGAACCTTGGGCTTCAGCCAATTCA-CAGCTCGCCTCCAGGGATGCGTGATACAT 106206 || || | ||| | | || | | | ||| | || | | | |||| || || Sbjct 5570 TCGTATGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAAGCAC-CGTGGTAGAT 5512 Query 106207 GGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA 106266 ||| |||||||| | || | | ||| ||||| |||||| |||| | ||| Sbjct 5511 GGTCTCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGGTAAACGGAG 5452 Query 106267 CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 106326 | || |||| || |||||||||||||| | | ||||||||| || || | ||| Sbjct 5451 AGCCAAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATT 5392 Query 106327 AGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386 ||| || || |||||||| |||| | || || | ||| | ||| | Sbjct 5391 GCTTCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCT 5332 Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA-- 106444 | ||||| | || || ||||| |||| ||||| |||| | ||| | Sbjct 5331 GACAACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCC---CTCGGCCAT 5275 Query 106445 -TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATC 106503 |||||| | |||| || || || || |||||||| || ||| |||||| | Sbjct 5274 GTTGACAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGC 5215 Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 | ||| || | ||||| || ||||||||||| || || || || | ||||||||| Sbjct 5214 AGAGTATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTG 5155 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 || |||||||||||||| ||||| ||||| |||||| | || | || ||||| ||||| Sbjct 5154 ATTGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTG 5095 Query 106624 TGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGT-C 106679 || || ||| || | | ||| | | | | | || | || | || |||| | | Sbjct 5094 TGCCTCGAGGATAGAATACCAAAGCTTTTGAGCCTTG----ATAGTCTTACGGCCTTTAC 5039 Query 106680 CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 106739 | | |||||| || || ||||||||||| ||||| | || | | | Sbjct 5038 CTTGTTTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGC 4979 Query 106740 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 106799 | || | || || || | || | ||| | || || ||||| |||||||||| Sbjct 4978 CAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGA 4919 Query 106800 AAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTT 106859 | || ||||||||||| |||| ||||||| || | ||| | || || | || | Sbjct 4918 AGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCAT 4859 Query 106860 GGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 106919 | || ||| | || | ||||| | || |||||| |||||||| ||||| |||| | Sbjct 4858 GATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGG 4799 Query 106920 CGA------TAGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAA 106973 ||| || | ||| | ||| |||||| ||||| | || || ||| | Sbjct 4798 CGAATGCACCAGGGCGCTTGTTA---CCACCTTGATCGACATATCTAGCGGTATTGTTGA 4742 Query 106974 ATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATT 107033 | || |||||||| |||| ||||| | || | |||||||| || ||| | Sbjct 4741 AAACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCAC 4682 Query 107034 TATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCG 107093 | | || | | ||||||| | |||||||| ||||| ||| || || | Sbjct 4681 CAGTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGG 4622 Query 107094 CACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGA 107153 |||| | | | ||| |||| || || | || |||||||| || | || |||| Sbjct 4621 CACAAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGA 4562 Query 107154 AGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAA 107213 |||| || | || | | ||||||||| || |||||| ||||| | ||||| Sbjct 4561 AGCATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTG 4502 Query 107214 TGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 107272 | || || | | |||||| || ||| || || | | | || || || || ||| Sbjct 4501 T-AAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG 4443 Query 107273 TGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCG 107332 || || || | ||| |||||||||| ||| | ||| || ||| | | |||||| Sbjct 4442 TGAATACCAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCG 4383 Query 107333 AGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 || || | || || | || ||||||| || |||| || ||||| Sbjct 4382 AGGCGGAGGAGGTATGATC-TCTCAAGAGTCTTGAATCCGAAGTA 4339 >seq5810 Length=707 Score = 143 bits (158), Expect = 3e-29 Identities = 196/270 (73%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || ||||||| || |||| |||||||||||| |||||| | ||||||| | Sbjct 666 GGGAGGGCGAGGGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTGTACTCAATG 607 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || |||| ||| || || ||| || |||| ||||| ||||||||||| || Sbjct 606 ATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCCTG 547 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| |||||||||||||||||| |||| | || ||||| ||||| | || |||||| Sbjct 546 TTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGAATG 487 Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTA 106692 || | ||| | || | | || | |||| || |||| || ||||| |||||| Sbjct 486 GCATACCAGAGTTTCTGAGCCTTG----ATGGTCTTGCGGCCACGGCCCTCTTGCTCGTA 431 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACC 106722 ||| | ||| ||||| || |||||||| || Sbjct 430 CTTGGCGTAAAGGGCATCGAACTCCTCGCC 401 >seq10051 Length=55976 Score = 82.4 bits (90), Expect = 9e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 155098 GGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCAC 155157 || || || || || || |||| ||| ||| ||||||||||| | || ||||| ||| Sbjct 28545 GGAGCCGGAGTAATCGACGCCGATTATCGAGGACAAGTCAAAGTCTTGCTGTTCAACCAC 28604 Query 155158 GGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 155217 ||||| ||||| || || || ||| | || ||||| || || ||| | || | ||| | Sbjct 28605 GGAGAGAAAGATTTCGATGTCAAGGAGGGAGATCGTATTGCGCAATTGGTGTTGGAGAGG 28664 Query 155218 TGTGAAACACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACAGAGAGAGGTGCGGGT 155277 | | ||||| || || |||| | | ||| | ||||||| | | | ||||| || Sbjct 28665 ATTTATACACCTGAGGTTATGGAAGTGGAAGTTTTGGAAGAGAGCGTGCGGGGTGCTGGA 28724 Query 155278 GGATTTGG 155285 || ||||| Sbjct 28725 GGGTTTGG 28732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589893947451480