Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 242 4e-59
seq5810 143 3e-29
seq10051 82.4 9e-11
>seq10763
Length=10051
Score = 242 bits (268), Expect = 4e-59
Identities = 1178/1845 (64%), Gaps = 49/1845 (3%)
Strand=Plus/Minus
Query 105558 TGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTC 105617
|||| |||||||| || ||| ||| |||||||||||||| || |||||||| |
Sbjct 6160 TGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGAC 6101
Query 105618 CTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 105677
| |||||| | | |||||| |||| || |||| ||| || || | ||||
Sbjct 6100 CCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATGT 6041
Query 105678 AAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATAT---CAA 105734
|| ||||| |||| || |||||||| |||||| | ||| ||||| | |||
Sbjct 6040 GAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACAA 5981
Query 105735 TGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGA 105794
|| || || | ||||||||| || || ||||||| || || || |||| |
Sbjct 5980 TGTT-TCGTTGAGA--GATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAA 5924
Query 105795 TATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGG 105854
| | | ||||||||||| ||||| || | || || ||| |||||| | | |
Sbjct 5923 TGTTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAG 5864
Query 105855 ACCAAAGACCAATCTTCTTGAGATCATTGACGAG--ATGCTTGTTGACAATCACAAACTC 105912
||||||| || || | | ||| || | || ||| ||| || | |||||
Sbjct 5863 ACCAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGG--GTTAACGACTTGGAACTC 5806
Query 105913 TCCCGCGAGGGTTCTTC-TCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTAT 105971
|| || | | | | || || ||||| | ||||| || || || ||||||||
Sbjct 5805 ACCGGCCAACACACGGCGTGAG-TAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGA 5747
Query 105972 TACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAA 106031
||| | ||||| | ||| ||| |||||||| || || | | | ||| || || |
Sbjct 5746 AACCGAGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGA 5687
Query 106032 GACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTC 106089
||| | || |||||| || ||||||| |||||| || | || | | || |
Sbjct 5686 TACCATGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAA-GATCCGTAGGAGTA 5628
Query 106090 ACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAACCCTCAAATGTC 106147
|| ||||||||||| |||||||| | ||||||| ||| ||||| || ||| ||| |
Sbjct 5627 ACAC-CCCACATATCATATTGAAGCTCACCCTTGGAGACT--GGAGATCCTTCATATGAC 5571
Query 106148 TCATAGGAACCTTGGGCTTCAGCCAATTCA-CAGCTCGCCTCCAGGGATGCGTGATACAT 106206
|| || | ||| | | || | | | ||| | || | | | |||| || ||
Sbjct 5570 TCGTATGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAAGCAC-CGTGGTAGAT 5512
Query 106207 GGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA 106266
||| |||||||| | || | | ||| ||||| |||||| |||| | |||
Sbjct 5511 GGTCTCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGGTAAACGGAG 5452
Query 106267 CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 106326
| || |||| || |||||||||||||| | | ||||||||| || || | |||
Sbjct 5451 AGCCAAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATT 5392
Query 106327 AGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386
||| || || |||||||| |||| | || || | ||| | ||| |
Sbjct 5391 GCTTCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCT 5332
Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA-- 106444
| ||||| | || || ||||| |||| ||||| |||| | ||| |
Sbjct 5331 GACAACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCC---CTCGGCCAT 5275
Query 106445 -TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATC 106503
|||||| | |||| || || || || |||||||| || ||| |||||| |
Sbjct 5274 GTTGACAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGC 5215
Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563
| ||| || | ||||| || ||||||||||| || || || || | |||||||||
Sbjct 5214 AGAGTATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTG 5155
Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623
|| |||||||||||||| ||||| ||||| |||||| | || | || ||||| |||||
Sbjct 5154 ATTGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTG 5095
Query 106624 TGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGT-C 106679
|| || ||| || | | ||| | | | | | || | || | || |||| | |
Sbjct 5094 TGCCTCGAGGATAGAATACCAAAGCTTTTGAGCCTTG----ATAGTCTTACGGCCTTTAC 5039
Query 106680 CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 106739
| | |||||| || || ||||||||||| ||||| | || | | |
Sbjct 5038 CTTGTTTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGC 4979
Query 106740 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 106799
| || | || || || | || | ||| | || || ||||| ||||||||||
Sbjct 4978 CAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGA 4919
Query 106800 AAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTT 106859
| || ||||||||||| |||| ||||||| || | ||| | || || | || |
Sbjct 4918 AGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCAT 4859
Query 106860 GGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 106919
| || ||| | || | ||||| | || |||||| |||||||| ||||| |||| |
Sbjct 4858 GATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGG 4799
Query 106920 CGA------TAGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAA 106973
||| || | ||| | ||| |||||| ||||| | || || ||| |
Sbjct 4798 CGAATGCACCAGGGCGCTTGTTA---CCACCTTGATCGACATATCTAGCGGTATTGTTGA 4742
Query 106974 ATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATT 107033
| || |||||||| |||| ||||| | || | |||||||| || ||| |
Sbjct 4741 AAACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCAC 4682
Query 107034 TATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCG 107093
| | || | | ||||||| | |||||||| ||||| ||| || || |
Sbjct 4681 CAGTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGG 4622
Query 107094 CACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGA 107153
|||| | | | ||| |||| || || | || |||||||| || | || ||||
Sbjct 4621 CACAAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGA 4562
Query 107154 AGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAA 107213
|||| || | || | | ||||||||| || |||||| ||||| | |||||
Sbjct 4561 AGCATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTG 4502
Query 107214 TGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 107272
| || || | | |||||| || ||| || || | | | || || || || |||
Sbjct 4501 T-AAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG 4443
Query 107273 TGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCG 107332
|| || || | ||| |||||||||| ||| | ||| || ||| | | ||||||
Sbjct 4442 TGAATACCAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCG 4383
Query 107333 AGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376
|| || | || || | || ||||||| || |||| || |||||
Sbjct 4382 AGGCGGAGGAGGTATGATC-TCTCAAGAGTCTTGAATCCGAAGTA 4339
>seq5810
Length=707
Score = 143 bits (158), Expect = 3e-29
Identities = 196/270 (73%), Gaps = 8/270 (3%)
Strand=Plus/Minus
Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516
|| ||||||| || |||| |||||||||||| |||||| | ||||||| |
Sbjct 666 GGGAGGGCGAGGGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTGTACTCAATG 607
Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576
|| || || |||| ||| || || ||| || |||| ||||| ||||||||||| ||
Sbjct 606 ATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCCTG 547
Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636
||||| |||||||||||||||||| |||| | || ||||| ||||| | || ||||||
Sbjct 546 TTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGAATG 487
Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTA 106692
|| | ||| | || | | || | |||| || |||| || ||||| ||||||
Sbjct 486 GCATACCAGAGTTTCTGAGCCTTG----ATGGTCTTGCGGCCACGGCCCTCTTGCTCGTA 431
Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACC 106722
||| | ||| ||||| || |||||||| ||
Sbjct 430 CTTGGCGTAAAGGGCATCGAACTCCTCGCC 401
>seq10051
Length=55976
Score = 82.4 bits (90), Expect = 9e-11
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 155098 GGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCAC 155157
|| || || || || || |||| ||| ||| ||||||||||| | || ||||| |||
Sbjct 28545 GGAGCCGGAGTAATCGACGCCGATTATCGAGGACAAGTCAAAGTCTTGCTGTTCAACCAC 28604
Query 155158 GGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 155217
||||| ||||| || || || ||| | || ||||| || || ||| | || | ||| |
Sbjct 28605 GGAGAGAAAGATTTCGATGTCAAGGAGGGAGATCGTATTGCGCAATTGGTGTTGGAGAGG 28664
Query 155218 TGTGAAACACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACAGAGAGAGGTGCGGGT 155277
| | ||||| || || |||| | | ||| | ||||||| | | | ||||| ||
Sbjct 28665 ATTTATACACCTGAGGTTATGGAAGTGGAAGTTTTGGAAGAGAGCGTGCGGGGTGCTGGA 28724
Query 155278 GGATTTGG 155285
|| |||||
Sbjct 28725 GGGTTTGG 28732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589893947451480
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