Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq10129 168 8e-37 >seq10129 Length=31709 Score = 168 bits (186), Expect = 8e-37 Identities = 213/293 (73%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 |||||||| | || | | ||| | || ||| | || | |||||||| ||||| ||| Sbjct 8538 GATATTGCATTTGGAAATGCTCAACGTTTCGGTGTACCATTTGGATATGGTGGTCCCCAT 8479 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866 || ||||||||||| | |||||||||||| |||||||||| || | || | ||| Sbjct 8478 GCCGCATTCTTTGCGGTTAGTGACAAGTATAAGCGAAAGATACCCGGACGTATCATCGGT 8419 Query 153867 CAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 153926 || ||||| |||| |||| ||| ||||| || |||| || |||||||| Sbjct 8418 GTATCCAAGGATAGATTAGGTGATAAGGCAATGAGATTGGCCTTACAAACAAGAGAGCAA 8359 Query 153927 CATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAAT 153986 |||||| ||||||| || ||||| || ||| | |||||||| |||||| |||| || || Sbjct 8358 CATATCCGGAGAGAAAAGGCAACTAGCAACGTTTGCACAGCGCAGGCATTGCTAGCCAAC 8299 Query 153987 ATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 154039 ||| || ||||||||| | |||||||| || | ||||| | ||||| || Sbjct 8298 ATGAGTGCATTCTATGCTGTTTATCATGGACCACAAGGACTCAAGGCTATTGC 8246 Score = 120 bits (132), Expect = 4e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 154871 TATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGA-CAGATAT 154929 ||| ||||| |||||||| ||| ||||||||| ||| | | || | | | | | | Sbjct 7348 TATCATGATCACATACCCTAGCACATTTGGTGTATTCGAACCGGAAATCAAAGCCGCT-T 7290 Query 154930 GTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCAC 154989 | | |||||||| | |||| ||||| ||||| | ||||| || || | ||||||| Sbjct 7289 GCGATATCGTTCACCAACATGGCGGTCAAGTATACATGGATGGTGCCAACATGAATGCAC 7230 Query 154990 AGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATA 155049 | | || || |||| ||||| ||| || ||||| || ||||| ||| | || | Sbjct 7229 AAATCGGTCTTTGCTCACCAGGTGAGATTGGCGCTGATGTCTGCCATCTTAACCTTCACA 7170 Query 155050 AAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 | || ||||||||||| ||||| ||||| || || ||||| |||||||| ||||| Sbjct 7169 AGACTTTCTGTATTCCTCATGGTGGTGGTGGACCAGGCGTCGGTCCTATTGGTGT 7115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579127532635680