Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq10129 149 7e-31
>seq10129
Length=31709
Score = 149 bits (164), Expect = 7e-31
Identities = 196/272 (72%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502
||| | || ||| | || | ||||| || ||||| ||||| ||||||||||| |
Sbjct 8517 CAACGTTTCGGTGTACCATTTGGATATGGTGGTCCCCATGCCGCATTCTTTGCGGTTAGT 8458
Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGT 158562
|||||||||||| |||||||||| || | || | ||| || ||||| ||||
Sbjct 8457 GACAAGTATAAGCGAAAGATACCCGGACGTATCATCGGTGTATCCAAGGATAGATTAGGT 8398
Query 158563 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCA 158622
|||| ||| ||||| || |||| || |||||||| |||||| | ||||| || |||
Sbjct 8397 GATAAGGCAATGAGATTGGCCTTACAAACAAGAGAGCAACATATCCGGAGAGAAAAGGCA 8338
Query 158623 ACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCA 158682
|| || ||| | |||||||| || ||| |||| || || ||| || |||||||| |
Sbjct 8337 ACTAGCAACGTTTGCACAGCGCAGGCATTGCTAGCCAACATGAGTGCATTCTATGCTGTT 8278
Query 158683 TATCATGGTGCAGATGGACTACATGCTATAGC 158714
|||||||| || | ||||| | ||||| ||
Sbjct 8277 TATCATGGACCACAAGGACTCAAGGCTATTGC 8246
Score = 129 bits (142), Expect = 7e-25
Identities = 171/235 (73%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 159546 TATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGA-CAGATAT 159604
||| ||||| ||||| || ||| ||||||||| ||| | | |||| | | | | |
Sbjct 7348 TATCATGATCACATACCCTAGCACATTTGGTGTATTCGAACCGGAAATCAAAGCCGCT-T 7290
Query 159605 GTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCAC 159664
| | || ||||| | |||| ||||| ||||| | |||||||| || | |||||||
Sbjct 7289 GCGATATCGTTCACCAACATGGCGGTCAAGTATACATGGATGGTGCCAACATGAATGCAC 7230
Query 159665 AGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATA 159724
| | ||||| |||| |||| ||| || ||||| || ||||| ||| | || |
Sbjct 7229 AAATCGGTCTTTGCTCACCAGGTGAGATTGGCGCTGATGTCTGCCATCTTAACCTTCACA 7170
Query 159725 AGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779
|||| ||||||||||| ||||| ||||| || || ||||| ||||||||||||||
Sbjct 7169 AGACTTTCTGTATTCCTCATGGTGGTGGTGGACCAGGCGTCGGTCCTATTGGTGT 7115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587964631512720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |