Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq10129 149 7e-31 >seq10129 Length=31709 Score = 149 bits (164), Expect = 7e-31 Identities = 196/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 ||| | || ||| | || | ||||| || ||||| ||||| ||||||||||| | Sbjct 8517 CAACGTTTCGGTGTACCATTTGGATATGGTGGTCCCCATGCCGCATTCTTTGCGGTTAGT 8458 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGT 158562 |||||||||||| |||||||||| || | || | ||| || ||||| |||| Sbjct 8457 GACAAGTATAAGCGAAAGATACCCGGACGTATCATCGGTGTATCCAAGGATAGATTAGGT 8398 Query 158563 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCA 158622 |||| ||| ||||| || |||| || |||||||| |||||| | ||||| || ||| Sbjct 8397 GATAAGGCAATGAGATTGGCCTTACAAACAAGAGAGCAACATATCCGGAGAGAAAAGGCA 8338 Query 158623 ACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCA 158682 || || ||| | |||||||| || ||| |||| || || ||| || |||||||| | Sbjct 8337 ACTAGCAACGTTTGCACAGCGCAGGCATTGCTAGCCAACATGAGTGCATTCTATGCTGTT 8278 Query 158683 TATCATGGTGCAGATGGACTACATGCTATAGC 158714 |||||||| || | ||||| | ||||| || Sbjct 8277 TATCATGGACCACAAGGACTCAAGGCTATTGC 8246 Score = 129 bits (142), Expect = 7e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 159546 TATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGA-CAGATAT 159604 ||| ||||| ||||| || ||| ||||||||| ||| | | |||| | | | | | Sbjct 7348 TATCATGATCACATACCCTAGCACATTTGGTGTATTCGAACCGGAAATCAAAGCCGCT-T 7290 Query 159605 GTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCAC 159664 | | || ||||| | |||| ||||| ||||| | |||||||| || | ||||||| Sbjct 7289 GCGATATCGTTCACCAACATGGCGGTCAAGTATACATGGATGGTGCCAACATGAATGCAC 7230 Query 159665 AGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATA 159724 | | ||||| |||| |||| ||| || ||||| || ||||| ||| | || | Sbjct 7229 AAATCGGTCTTTGCTCACCAGGTGAGATTGGCGCTGATGTCTGCCATCTTAACCTTCACA 7170 Query 159725 AGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||| ||||||||||| ||||| ||||| || || ||||| |||||||||||||| Sbjct 7169 AGACTTTCTGTATTCCTCATGGTGGTGGTGGACCAGGCGTCGGTCCTATTGGTGT 7115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587964631512720