Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq655 141 2e-28 seq10174 134 3e-26 seq9962 122 2e-22 >seq655 Length=7676 Score = 141 bits (156), Expect = 2e-28 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | ||| | || ||||| || || ||||| || ||||| |||| ||| || | Sbjct 3708 AGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGG 3767 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||||||| || ||||| |||||||| | ||||| || || ||||| || || || Sbjct 3768 CCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCC 3827 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||| || ||| ||||| || || ||||||||| ||| || ||||| || Sbjct 3828 TTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTG 3887 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | |||||||| || | ||| || |||| Sbjct 3888 ATAGTCTTTCCGGTAAGAGTCTTGACGA 3915 >seq10174 Length=26070 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| || || ||||||| ||||| | |||||||| || ||||| || |||||||| Sbjct 24505 TTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATC 24564 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||||||||||| || ||||| || || ||||||||||| || |||||| || || Sbjct 24565 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 24624 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || ||||| || ||| || |||||||| | ||||| || ||||| || || ||||| Sbjct 24625 ATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 24683 >seq9962 Length=55051 Score = 122 bits (134), Expect = 2e-22 Identities = 132/174 (76%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 194949 CTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAA 195008 ||| ||||| | ||| ||||| | |||| |||| ||||| || | | ||| ||||| || Sbjct 10933 CTCCTTTTGGAAATTATAATCTGAAAGAATTCTACCATCCTCCAA-TACTTTCCTGCAAA 10991 Query 195009 GATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTT 195068 || | |||||||||||| || ||||| |||| |||||||| || ||| || ||| || Sbjct 10992 TATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGATCTTTGTCTGGACATT 11051 Query 195069 CTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||||| || || ||||||||| | |||| |||||||| ||||| || Sbjct 11052 ATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAGGT 11105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109314187200959