Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq655 141 2e-28
seq10174 134 3e-26
seq9962 122 2e-22
>seq655
Length=7676
Score = 141 bits (156), Expect = 2e-28
Identities = 156/208 (75%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
||||| | ||| | || ||||| || || ||||| || ||||| |||| ||| || |
Sbjct 3708 AGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGG 3767
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
||||||||||| || ||||| |||||||| | ||||| || || ||||| || || ||
Sbjct 3768 CCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCC 3827
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| |||||||| || ||| ||||| || || ||||||||| ||| || ||||| ||
Sbjct 3828 TTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTG 3887
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGA 195130
| |||||||| || | ||| || ||||
Sbjct 3888 ATAGTCTTTCCGGTAAGAGTCTTGACGA 3915
>seq10174
Length=26070
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
||||| || || ||||||| ||||| | |||||||| || ||||| || ||||||||
Sbjct 24505 TTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATC 24564
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| ||||||||||| || ||||| || || ||||||||||| || |||||| || ||
Sbjct 24565 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 24624
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| ||||| || ||| || |||||||| | ||||| || ||||| || || |||||
Sbjct 24625 ATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 24683
>seq9962
Length=55051
Score = 122 bits (134), Expect = 2e-22
Identities = 132/174 (76%), Gaps = 1/174 (1%)
Strand=Plus/Plus
Query 194949 CTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAA 195008
||| ||||| | ||| ||||| | |||| |||| ||||| || | | ||| ||||| ||
Sbjct 10933 CTCCTTTTGGAAATTATAATCTGAAAGAATTCTACCATCCTCCAA-TACTTTCCTGCAAA 10991
Query 195009 GATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTT 195068
|| | |||||||||||| || ||||| |||| |||||||| || ||| || ||| ||
Sbjct 10992 TATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGATCTTTGTCTGGACATT 11051
Query 195069 CTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122
|||||||| || || ||||||||| | |||| |||||||| ||||| ||
Sbjct 11052 ATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAGGT 11105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109314187200959
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |