Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10763 188 8e-43 >seq10763 Length=10051 Score = 188 bits (208), Expect = 8e-43 Identities = 520/793 (66%), Gaps = 14/793 (2%) Strand=Plus/Minus Query 47960 GATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAA 48019 ||| || || | ||| | ||||| | ||||| || || || ||||||||||| || Sbjct 5175 GATTGTGCCGAGATTCTTTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAA 5116 Query 48020 AGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTAT 48079 ||| |||| || || |||| | || | |||||| | ||||| | |||||| || Sbjct 5115 AGGGTTTCCTGTCTCAGTCTGTGCCTCGAGGATAGAATACCAAAGCTTTTGAGCCTTGAT 5056 Query 48080 A-----ACAGC-TCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTC 48133 | || || | || ||| || || | | | | | | | |||| ||| || Sbjct 5055 AGTCTTACGGCCTTTACCTTGTTTCTCGTAACCCTCATAA----AGAGCTTC--AAACTC 5002 Query 48134 ATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTC 48193 ||| ||||| |||| | | || ||||||||||| || || ||||| | || |||||| | Sbjct 5001 ATCACCATAGACATCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCC 4942 Query 48194 ATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCT 48253 | |||| || | |||| || | |||||| ||||| || || ||| | || | Sbjct 4941 GTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCG 4882 Query 48254 AGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGC 48313 | || | ||| || || ||| |||| || || || | ||| || | | ||| || Sbjct 4881 TGCTCGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGC 4822 Query 48314 ATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTAT 48373 |||||||||||| | || || || | | |||| || || || ||||| |||||||| | Sbjct 4821 ATGCCATGGTTCAAGGTAGATGGCGAATGCACCAGGGCGCTTGTTACCACCTTGATCGAC 4762 Query 48374 ATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATT 48433 |||||| || |||||||| |||||| | ||| || || ||||| || || | ||||| Sbjct 4761 ATATCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATT 4702 Query 48434 GGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACC 48493 || || | ||| || ||| |||| | || | || | ||| ||||| || Sbjct 4701 TGTGCCAGCAATGTATGCACCAGTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCC 4642 Query 48494 TGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATC 48553 || | ||||| || | ||||| || | |||||||||||||| || |||||||| Sbjct 4641 AGCATTCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAATACTATC 4582 Query 48554 ATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAA 48613 || |||| | | || || || ||| | ||| | || || || | || Sbjct 4581 CTCCTTCATGTCAATGAGGAAGCATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAA 4522 Query 48614 TAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAAC 48673 | ||||||||| || || |||| |||| | || | || || || |||||||| | Sbjct 4521 GAGTGTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGC 4462 Query 48674 AGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTC 48732 || ||||| || | || ||||| | | |||||||| | ||| | ||| || | Sbjct 4461 GCTCTCGATATCATCACCG-TGAATACCAACGGCAACACGCATAATCATTTGTTGTGGAC 4403 Query 48733 TTTCAACAATTTT 48745 |||| ||| ||| Sbjct 4402 GTTCAGCAACTTT 4390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562026050558280