Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 188 8e-43
>seq10763
Length=10051
Score = 188 bits (208), Expect = 8e-43
Identities = 520/793 (66%), Gaps = 14/793 (2%)
Strand=Plus/Minus
Query 47960 GATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAA 48019
||| || || | ||| | ||||| | ||||| || || || ||||||||||| ||
Sbjct 5175 GATTGTGCCGAGATTCTTTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAA 5116
Query 48020 AGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTAT 48079
||| |||| || || |||| | || | |||||| | ||||| | |||||| ||
Sbjct 5115 AGGGTTTCCTGTCTCAGTCTGTGCCTCGAGGATAGAATACCAAAGCTTTTGAGCCTTGAT 5056
Query 48080 A-----ACAGC-TCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTC 48133
| || || | || ||| || || | | | | | | | |||| ||| ||
Sbjct 5055 AGTCTTACGGCCTTTACCTTGTTTCTCGTAACCCTCATAA----AGAGCTTC--AAACTC 5002
Query 48134 ATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTC 48193
||| ||||| |||| | | || ||||||||||| || || ||||| | || |||||| |
Sbjct 5001 ATCACCATAGACATCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCC 4942
Query 48194 ATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCT 48253
| |||| || | |||| || | |||||| ||||| || || ||| | || |
Sbjct 4941 GTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCG 4882
Query 48254 AGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGC 48313
| || | ||| || || ||| |||| || || || | ||| || | | ||| ||
Sbjct 4881 TGCTCGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGC 4822
Query 48314 ATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTAT 48373
|||||||||||| | || || || | | |||| || || || ||||| |||||||| |
Sbjct 4821 ATGCCATGGTTCAAGGTAGATGGCGAATGCACCAGGGCGCTTGTTACCACCTTGATCGAC 4762
Query 48374 ATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATT 48433
|||||| || |||||||| |||||| | ||| || || ||||| || || | |||||
Sbjct 4761 ATATCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATT 4702
Query 48434 GGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACC 48493
|| || | ||| || ||| |||| | || | || | ||| ||||| ||
Sbjct 4701 TGTGCCAGCAATGTATGCACCAGTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCC 4642
Query 48494 TGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATC 48553
|| | ||||| || | ||||| || | |||||||||||||| || ||||||||
Sbjct 4641 AGCATTCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAATACTATC 4582
Query 48554 ATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAA 48613
|| |||| | | || || || ||| | ||| | || || || | ||
Sbjct 4581 CTCCTTCATGTCAATGAGGAAGCATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAA 4522
Query 48614 TAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAAC 48673
| ||||||||| || || |||| |||| | || | || || || |||||||| |
Sbjct 4521 GAGTGTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGC 4462
Query 48674 AGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTC 48732
|| ||||| || | || ||||| | | |||||||| | ||| | ||| || |
Sbjct 4461 GCTCTCGATATCATCACCG-TGAATACCAACGGCAACACGCATAATCATTTGTTGTGGAC 4403
Query 48733 TTTCAACAATTTT 48745
|||| ||| |||
Sbjct 4402 GTTCAGCAACTTT 4390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562026050558280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |