Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq10370 156 3e-32
seq1669 111 1e-18
seq10097 104 2e-16
seq655 91.5 1e-12
seq9952 89.7 4e-12
>seq10370
Length=25047
Score = 156 bits (172), Expect = 3e-32
Identities = 392/591 (66%), Gaps = 6/591 (1%)
Strand=Plus/Plus
Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053
||| ||||| ||||| || ||||| || |||||| ||| | | | ||| | | |
Sbjct 13305 TATCGGTATCGATTTGGGTACCACCTACTCTTGTGTAGGTATCTTCAGAGATGACAGAAT 13364
Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113
||||||||||||||||| ||||| ||| |||| ||||| || | ||| ||||||| ||
Sbjct 13365 CGAAATTATTGCCAATGACCAAGGAAACCGAACCACTCCTTCGTTCGTTGCTTTCACCGA 13424
Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173
||||| | ||| | || ||||| || || | |||| | | || || || ||
Sbjct 13425 TACTGAGCGTTTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCATATAACAC 13484
Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232
| || ||||| || |||||||| ||| | ||||| | ||| | || || || |
Sbjct 13485 CGTCTTCGATGCCAAGCGTTTAATCGGACGCAAGTTCGCA-GATGCTGAAGTACAAGCCG 13543
Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT- 550291
|||||||||||| || ||| | | || | | ||||||| || ||||| | |
Sbjct 13544 ATATGAAGCATTTCCCATTCAAGGTCATTGACCGTGCTGGAAAGCCAGTCATTGAGGTTG 13603
Query 550292 -ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350
||| | ||| || ||||| |||| || | || ||||| ||||| || |
Sbjct 13604 AGTTCA--AGGGAGAACAAAAGCAATTCACACCTGAGGAGATCTCATCGATGGTCTTGGT 13661
Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410
|| |||| | | || || |||| | ||| | || | | || || | ||
Sbjct 13662 CAAGATGAGAGAGACTGCTGAGGCTTACCTCGGTGGAACTGTCAACAACGCTGTCGTCAC 13721
Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470
||| ||||| || || | || || ||||||||||| || || |||||||| | |||||
Sbjct 13722 TGTCCCAGCTTACTTCACCGATTCCCAACGTCAAGCCACAAAGGATGCTGGTCTGATTGC 13781
Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
||| ||||| ||||| | || ||||| || ||||| || || || |||| || || |
Sbjct 13782 TGGTCTTAACGTTCTCAGAATCATCAACGAGCCTACCGCAGCCGCCATTGCTTACGGTTT 13841
Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
|| || | || |||| |||||| || ||||| ||| ||| ||
Sbjct 13842 GGACAAGAAGGTCGAGGGTGAACGTAATGTTCTTATCTTCGATCTTGGTGG 13892
Score = 109 bits (120), Expect = 4e-18
Identities = 455/709 (64%), Gaps = 23/709 (3%)
Strand=Plus/Plus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
|||||||||||||| | || || ||||| | ||||| || | || |||||| | |
Sbjct 14137 GCTCTTCGTCGTCTCCGCACAGCATGCGAGCGTGCCAAGCGTACCCTCTCATCTTCTGCC 14196
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
|| ||| | || ||| | || || | || ||||| || || | | || | || |
Sbjct 14197 CAGACCTCCATCGAAATCGACTCGCTCTTCGAGGGTATCGACTTCTACACTTCCATCACC 14256
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074
| || ||||| || |||| || ||||| || || | ||||| ||
Sbjct 14257 CGTGCTCGTTTTGAGGAACTTTGCCAGGACCTCTTCCGATCCACTACCACCCCAGTCGAC 14316
Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134
| || | ||| | |||||||| ||||||| ||| || || || || || ||||||
Sbjct 14317 CGTGTCCTCGCTGATGCCAAGATTGACAAATCCAGAGTTCACGAGATCGTCCTCGTTGGT 14376
Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAA 552191
|| || || | || || || | ||| | | | | | || ||||| |||||
Sbjct 14377 GGTTCCACCCGTATCCCACGTATCCA-GAA--GCTCATTACCGACTACTTCAACGGTAAG 14433
Query 552192 AAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249
| ||| |||| | || || |||||||||||||| || ||||| || | || |
Sbjct 14434 GAGCCAAAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGG 14491
Query 552250 CAGCTATTCTTTCTGGACAAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATG 552306
| || ||||| ||||| | || | || || | || || | || | ||| | ||||
Sbjct 14492 CCGCCATTCTCTCTGGTGACACTTCATCCAAGTCCACCAACGAGATCCTTCTTCTCGATG 14551
Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366
| | || | ||||| ||| | || || | ||| || ||||| || || ||
Sbjct 14552 TCGCGCCGTTGTCTCTCGGTATTGAGACTGCTGGTGGACAGATGACCAAGCTCATTCCCC 14611
Query 552367 GAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAA 552426
|||| || ||||| ||| || ||||| || || || || | || || || |||
Sbjct 14612 GAAACACCACTATCCCTACCAAGAAATCCGAAGTTTTCTCCACCTTCTCCGACAACCAAC 14671
Query 552427 CTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAAC 552486
||| ||| |||||| |||| || || || | || ||| || || || ||||
Sbjct 14672 CTGGTGTGCTCATTCAAGTTTTCGAGGGTGAGCGTCAACGCACCAAGGACAA----CAAC 14727
Query 552487 TTGGT-----ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAAT 552541
||| | | || || ||| ||||| || ||||| || ||||| || || |||||
Sbjct 14728 TTGATGGGTAAATTCGAACTTA-CTGGTATCCCACCTGCGCCCCGTGGTGTTCCTCAAAT 14786
Query 552542 TGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590
|| || || |||||||| |||||||| || || |||| || |||||
Sbjct 14787 CGAGGTCACCTTCGATATTGATGCCAACGGTATCATGAACGTCTCTGCT 14835
>seq1669
Length=9415
Score = 111 bits (122), Expect = 1e-18
Identities = 117/153 (76%), Gaps = 1/153 (1%)
Strand=Plus/Plus
Query 550379 GTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| ||||||| || | | || || || ||||| ||||| || || || ||| ||
Sbjct 3049 GTTGGGCAAGAAGGTTTCCAAGGCCGTCATCACTGTTCCAGCCTACTTCAACGACAACCA 3108
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
||||||||||| || |||||||| |||||||| || || ||||| ||||| |||||
Sbjct 3109 GCGTCAAGCTACCAAGGATGCTGGTGCCATTGCTGGCCTCAACGTTCTCCGTATCATCAA 3168
Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
|||||||| |||||||| | ||||| || ||
Sbjct 3169 CGAACCTACCGCTGCTGCCATCGCATACGGTCT 3201
>seq10097
Length=29191
Score = 104 bits (114), Expect = 2e-16
Identities = 116/154 (75%), Gaps = 1/154 (1%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | ||||| || || || || || ||||| ||||||||||| || |||||||
Sbjct 18288 ATGCTGTTGTCACTGTTCCCGCCTACTTCAACGACTCCCAACGTCAAGCGACCAAAGATG 18229
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| | ||||| || | || |||||| | | |||| || || || || |||||||
Sbjct 18228 CTGGTCAAATTGCCGGCTTGAACGTTCTTAGAGTGGTCAACGAGCCAACCGCAGCTGCAC 18169
Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGA 550551
|||| ||||| ||||| ||| || | || |||||
Sbjct 18168 TTGCCTATGGTCTTGAGAAAGATGAGGA-CAAGA 18136
>seq655
Length=7676
Score = 91.5 bits (100), Expect = 1e-12
Identities = 156/222 (70%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313
|||||| || || | ||| | || || || ||||| || || ||||| | ||||||
Sbjct 3251 GAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGG--ATGTTATAATCCGAAAGAGTT 3308
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
|| || || | ||| ||||||||||| || | | ||| ||||| || ||||| |||
Sbjct 3309 CTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCT 3368
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432
|| || ||||| || ||| ||||| ||||| ||||| | || | || ||| |
Sbjct 3369 TCCTTGTCTTGGATCTTTGTCTTTACGTTATCAATGGTATCTG-ACGATTCCACTTCCAA 3427
Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|||| || || ||||| | ||| ||||| || ||||||||
Sbjct 3428 CGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3469
>seq9952
Length=86145
Score = 89.7 bits (98), Expect = 4e-12
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 399569 ATATGACAAGGAGGTAATGCCAtttttttAATGTCGACAGGATTCCATAAACTTATAATT 399628
||||||||||| ||||||||||| ||| || || | |||||| ||||| ||
Sbjct 30363 ATATGACAAGGTGGTAATGCCATGAGTTTTATATCAGCTACATTCCACGCACTTAATATA 30422
Query 399629 ATTCTGCGATCATTTGGATTATTCAT-AATAGCATCAATACAATTATT-TAATTGATCAA 399686
|| |||||||| ||||||||| | ||| | || || || | ||||||||| |
Sbjct 30423 ATCCTGCGATCCCAAGGATTATTCTTCAATTTC--CAGATCACTTCTGCTAATTGATCGA 30480
Query 399687 TTCCTTGATCATG-ATAATCTGTTTTACAATTATCATATTTGGCTCCGAAATGTCTCATT 399745
|||||| || || ||||||||| | || ||||| |||| |||||||| | | |
Sbjct 30481 CTCCTTG-TCCTGTATAATCTGTCGCAGCATCTACATATGTGGCGCCGAAATGCCGCCAT 30539
Query 399746 TGAAATCCATAACCGGGGCCAATATCTCC 399774
||||||||||| |||| || | ||| ||
Sbjct 30540 TGAAATCCATATACGGGACCTAGATCCCC 30568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028673179125730
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