Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq10370 156 3e-32 seq1669 111 1e-18 seq10097 104 2e-16 seq655 91.5 1e-12 seq9952 89.7 4e-12 >seq10370 Length=25047 Score = 156 bits (172), Expect = 3e-32 Identities = 392/591 (66%), Gaps = 6/591 (1%) Strand=Plus/Plus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||||| || ||||| || |||||| ||| | | | ||| | | | Sbjct 13305 TATCGGTATCGATTTGGGTACCACCTACTCTTGTGTAGGTATCTTCAGAGATGACAGAAT 13364 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 ||||||||||||||||| ||||| ||| |||| ||||| || | ||| ||||||| || Sbjct 13365 CGAAATTATTGCCAATGACCAAGGAAACCGAACCACTCCTTCGTTCGTTGCTTTCACCGA 13424 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 ||||| | ||| | || ||||| || || | |||| | | || || || || Sbjct 13425 TACTGAGCGTTTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCATATAACAC 13484 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | || ||||| || |||||||| ||| | ||||| | ||| | || || || | Sbjct 13485 CGTCTTCGATGCCAAGCGTTTAATCGGACGCAAGTTCGCA-GATGCTGAAGTACAAGCCG 13543 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT- 550291 |||||||||||| || ||| | | || | | ||||||| || ||||| | | Sbjct 13544 ATATGAAGCATTTCCCATTCAAGGTCATTGACCGTGCTGGAAAGCCAGTCATTGAGGTTG 13603 Query 550292 -ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 ||| | ||| || ||||| |||| || | || ||||| ||||| || | Sbjct 13604 AGTTCA--AGGGAGAACAAAAGCAATTCACACCTGAGGAGATCTCATCGATGGTCTTGGT 13661 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || |||| | | || || |||| | ||| | || | | || || | || Sbjct 13662 CAAGATGAGAGAGACTGCTGAGGCTTACCTCGGTGGAACTGTCAACAACGCTGTCGTCAC 13721 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| ||||| || || | || || ||||||||||| || || |||||||| | ||||| Sbjct 13722 TGTCCCAGCTTACTTCACCGATTCCCAACGTCAAGCCACAAAGGATGCTGGTCTGATTGC 13781 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| ||||| ||||| | || ||||| || ||||| || || || |||| || || | Sbjct 13782 TGGTCTTAACGTTCTCAGAATCATCAACGAGCCTACCGCAGCCGCCATTGCTTACGGTTT 13841 Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || || | || |||| |||||| || ||||| ||| ||| || Sbjct 13842 GGACAAGAAGGTCGAGGGTGAACGTAATGTTCTTATCTTCGATCTTGGTGG 13892 Score = 109 bits (120), Expect = 4e-18 Identities = 455/709 (64%), Gaps = 23/709 (3%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 |||||||||||||| | || || ||||| | ||||| || | || |||||| | | Sbjct 14137 GCTCTTCGTCGTCTCCGCACAGCATGCGAGCGTGCCAAGCGTACCCTCTCATCTTCTGCC 14196 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || ||| | || ||| | || || | || ||||| || || | | || | || | Sbjct 14197 CAGACCTCCATCGAAATCGACTCGCTCTTCGAGGGTATCGACTTCTACACTTCCATCACC 14256 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | || ||||| || |||| || ||||| || || | ||||| || Sbjct 14257 CGTGCTCGTTTTGAGGAACTTTGCCAGGACCTCTTCCGATCCACTACCACCCCAGTCGAC 14316 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | || | ||| | |||||||| ||||||| ||| || || || || || |||||| Sbjct 14317 CGTGTCCTCGCTGATGCCAAGATTGACAAATCCAGAGTTCACGAGATCGTCCTCGTTGGT 14376 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAA 552191 || || || | || || || | ||| | | | | | || ||||| ||||| Sbjct 14377 GGTTCCACCCGTATCCCACGTATCCA-GAA--GCTCATTACCGACTACTTCAACGGTAAG 14433 Query 552192 AAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249 | ||| |||| | || || |||||||||||||| || ||||| || | || | Sbjct 14434 GAGCCAAAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGG 14491 Query 552250 CAGCTATTCTTTCTGGACAAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATG 552306 | || ||||| ||||| | || | || || | || || | || | ||| | |||| Sbjct 14492 CCGCCATTCTCTCTGGTGACACTTCATCCAAGTCCACCAACGAGATCCTTCTTCTCGATG 14551 Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366 | | || | ||||| ||| | || || | ||| || ||||| || || || Sbjct 14552 TCGCGCCGTTGTCTCTCGGTATTGAGACTGCTGGTGGACAGATGACCAAGCTCATTCCCC 14611 Query 552367 GAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAA 552426 |||| || ||||| ||| || ||||| || || || || | || || || ||| Sbjct 14612 GAAACACCACTATCCCTACCAAGAAATCCGAAGTTTTCTCCACCTTCTCCGACAACCAAC 14671 Query 552427 CTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAAC 552486 ||| ||| |||||| |||| || || || | || ||| || || || |||| Sbjct 14672 CTGGTGTGCTCATTCAAGTTTTCGAGGGTGAGCGTCAACGCACCAAGGACAA----CAAC 14727 Query 552487 TTGGT-----ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAAT 552541 ||| | | || || ||| ||||| || ||||| || ||||| || || ||||| Sbjct 14728 TTGATGGGTAAATTCGAACTTA-CTGGTATCCCACCTGCGCCCCGTGGTGTTCCTCAAAT 14786 Query 552542 TGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 || || || |||||||| |||||||| || || |||| || ||||| Sbjct 14787 CGAGGTCACCTTCGATATTGATGCCAACGGTATCATGAACGTCTCTGCT 14835 >seq1669 Length=9415 Score = 111 bits (122), Expect = 1e-18 Identities = 117/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 550379 GTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| ||||||| || | | || || || ||||| ||||| || || || ||| || Sbjct 3049 GTTGGGCAAGAAGGTTTCCAAGGCCGTCATCACTGTTCCAGCCTACTTCAACGACAACCA 3108 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 ||||||||||| || |||||||| |||||||| || || ||||| ||||| ||||| Sbjct 3109 GCGTCAAGCTACCAAGGATGCTGGTGCCATTGCTGGCCTCAACGTTCTCCGTATCATCAA 3168 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 |||||||| |||||||| | ||||| || || Sbjct 3169 CGAACCTACCGCTGCTGCCATCGCATACGGTCT 3201 >seq10097 Length=29191 Score = 104 bits (114), Expect = 2e-16 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || || || || || ||||| ||||||||||| || ||||||| Sbjct 18288 ATGCTGTTGTCACTGTTCCCGCCTACTTCAACGACTCCCAACGTCAAGCGACCAAAGATG 18229 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | ||||| || | || |||||| | | |||| || || || || ||||||| Sbjct 18228 CTGGTCAAATTGCCGGCTTGAACGTTCTTAGAGTGGTCAACGAGCCAACCGCAGCTGCAC 18169 Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGA 550551 |||| ||||| ||||| ||| || | || ||||| Sbjct 18168 TTGCCTATGGTCTTGAGAAAGATGAGGA-CAAGA 18136 >seq655 Length=7676 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| || || | ||| | || || || ||||| || || ||||| | |||||| Sbjct 3251 GAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGG--ATGTTATAATCCGAAAGAGTT 3308 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || || || | ||| ||||||||||| || | | ||| ||||| || ||||| ||| Sbjct 3309 CTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCT 3368 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || || ||||| || ||| ||||| ||||| ||||| | || | || ||| | Sbjct 3369 TCCTTGTCTTGGATCTTTGTCTTTACGTTATCAATGGTATCTG-ACGATTCCACTTCCAA 3427 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || ||||| | ||| ||||| || |||||||| Sbjct 3428 CGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3469 >seq9952 Length=86145 Score = 89.7 bits (98), Expect = 4e-12 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 399569 ATATGACAAGGAGGTAATGCCAtttttttAATGTCGACAGGATTCCATAAACTTATAATT 399628 ||||||||||| ||||||||||| ||| || || | |||||| ||||| || Sbjct 30363 ATATGACAAGGTGGTAATGCCATGAGTTTTATATCAGCTACATTCCACGCACTTAATATA 30422 Query 399629 ATTCTGCGATCATTTGGATTATTCAT-AATAGCATCAATACAATTATT-TAATTGATCAA 399686 || |||||||| ||||||||| | ||| | || || || | ||||||||| | Sbjct 30423 ATCCTGCGATCCCAAGGATTATTCTTCAATTTC--CAGATCACTTCTGCTAATTGATCGA 30480 Query 399687 TTCCTTGATCATG-ATAATCTGTTTTACAATTATCATATTTGGCTCCGAAATGTCTCATT 399745 |||||| || || ||||||||| | || ||||| |||| |||||||| | | | Sbjct 30481 CTCCTTG-TCCTGTATAATCTGTCGCAGCATCTACATATGTGGCGCCGAAATGCCGCCAT 30539 Query 399746 TGAAATCCATAACCGGGGCCAATATCTCC 399774 ||||||||||| |||| || | ||| || Sbjct 30540 TGAAATCCATATACGGGACCTAGATCCCC 30568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028673179125730