Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq655 129 5e-25
seq9962 89.7 4e-13
>seq655
Length=7676
Score = 129 bits (142), Expect = 5e-25
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338
|| ||||| || || ||||| | | |||||| | || ||||||||||| || |||||
Sbjct 3279 TCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAG 3338
Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398
|||||||| ||||||||||| ||||| ||||| || ||||| || ||| ||||| |
Sbjct 3339 ATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCTTGGATCTTTGTCTTTACGTTA 3398
Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458
|| | || || |||| ||||||||| | || | || || || || ||||| || |||
Sbjct 3399 TCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAACA 3458
Query 101459 AATATCTGCAT 101469
|| || |||||
Sbjct 3459 AAGATTTGCAT 3469
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| ||||| || || ||||| ||||| || ||||| |||| | || | | |||| ||
Sbjct 3716 AACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCTTC 3775
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
| ||| ||||| || || |||||||| || ||||| || || || || || ||||||||
Sbjct 3776 GAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCCTTATCTTG 3835
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||| || || || | || | |||||| || | ||| || |||||||||| || ||
Sbjct 3836 AATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTGATAGTCTT 3895
Query 101440 GCCGGTTAAAGTTTTTACAAATAT 101463
||||| | ||| || || | |||
Sbjct 3896 TCCGGTAAGAGTCTTGACGACTAT 3919
Score = 109 bits (120), Expect = 4e-19
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||| || ||||| || || || || ||||| |||| | || | | |||| || | |||
Sbjct 4007 ATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGTTG 4066
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || ||||| |||||||||||||| || || || || || || ||||| ||||| ||
Sbjct 4067 CTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTT 4126
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || | |||||| || | ||| || ||||| |||| || ||||||||
Sbjct 4127 GGTCTTGACATTGTCGATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGT 4186
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| | || ||||| ||||| || |||||||||| | || | | |||| |||
Sbjct 3489 ACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCCATCCTCC 3548
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| |||||||| || || || | ||| || ||||| || || ||||| || |||||||||
Sbjct 3549 AACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTTATCTTGA 3608
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| | || | || ||||||| || || || | |||| || ||
Sbjct 3609 ATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACCTCTAATGTGATTGTCTTT 3668
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | || || || || ||||||||
Sbjct 3669 CCAGTAAGGGTCTTGACGAAGATCTGCAT 3697
>seq9962
Length=55051
Score = 89.7 bits (98), Expect = 4e-13
Identities = 108/146 (74%), Gaps = 1/146 (1%)
Strand=Plus/Plus
Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338
|| ||||| | ||| ||||| | | | |||| |||| |||||| ||| |||||||||
Sbjct 10934 TCCTTTTGGAAATTATAATCTGAAAGAATTCTACCATCCTCCAATA-CTTTCCTGCAAAT 10992
Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398
||||| || ||||| ||||| ||||| |||| || ||||| || ||| | ||| |
Sbjct 10993 ATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGATCTTTGTCTGGACATTA 11052
Query 101399 TCTACAGTGTCAGACGTTTCCACTTC 101424
|| | || || |||| |||||||||
Sbjct 11053 TCAATGGTATCTGACGATTCCACTTC 11078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396221521294389
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |