Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq655 129 5e-25 seq9962 89.7 4e-13 >seq655 Length=7676 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 || ||||| || || ||||| | | |||||| | || ||||||||||| || ||||| Sbjct 3279 TCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAG 3338 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 |||||||| ||||||||||| ||||| ||||| || ||||| || ||| ||||| | Sbjct 3339 ATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCTTGGATCTTTGTCTTTACGTTA 3398 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || | || || |||| ||||||||| | || | || || || || ||||| || ||| Sbjct 3399 TCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAACA 3458 Query 101459 AATATCTGCAT 101469 || || ||||| Sbjct 3459 AAGATTTGCAT 3469 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| ||||| || || ||||| ||||| || ||||| |||| | || | | |||| || Sbjct 3716 AACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCTTC 3775 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | ||| ||||| || || |||||||| || ||||| || || || || || |||||||| Sbjct 3776 GAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCCTTATCTTG 3835 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| || || || | || | |||||| || | ||| || |||||||||| || || Sbjct 3836 AATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTGATAGTCTT 3895 Query 101440 GCCGGTTAAAGTTTTTACAAATAT 101463 ||||| | ||| || || | ||| Sbjct 3896 TCCGGTAAGAGTCTTGACGACTAT 3919 Score = 109 bits (120), Expect = 4e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || ||||| || || || || ||||| |||| | || | | |||| || | ||| Sbjct 4007 ATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGTTG 4066 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| |||||||||||||| || || || || || || ||||| ||||| || Sbjct 4067 CTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTT 4126 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | |||||| || | ||| || ||||| |||| || |||||||| Sbjct 4127 GGTCTTGACATTGTCGATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGT 4186 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | || ||||| ||||| || |||||||||| | || | | |||| ||| Sbjct 3489 ACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCCATCCTCC 3548 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || |||||||| || || || | ||| || ||||| || || ||||| || ||||||||| Sbjct 3549 AACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTTATCTTGA 3608 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || ||||||| || || || | |||| || || Sbjct 3609 ATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACCTCTAATGTGATTGTCTTT 3668 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || |||||||| Sbjct 3669 CCAGTAAGGGTCTTGACGAAGATCTGCAT 3697 >seq9962 Length=55051 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/146 (74%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 || ||||| | ||| ||||| | | | |||| |||| |||||| ||| ||||||||| Sbjct 10934 TCCTTTTGGAAATTATAATCTGAAAGAATTCTACCATCCTCCAATA-CTTTCCTGCAAAT 10992 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 ||||| || ||||| ||||| ||||| |||| || ||||| || ||| | ||| | Sbjct 10993 ATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGATCTTTGTCTGGACATTA 11052 Query 101399 TCTACAGTGTCAGACGTTTCCACTTC 101424 || | || || |||| ||||||||| Sbjct 11053 TCAATGGTATCTGACGATTCCACTTC 11078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396221521294389