Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq10338 125 1e-23 seq10763 107 4e-18 >seq10338 Length=29807 Score = 125 bits (138), Expect = 1e-23 Identities = 325/494 (66%), Gaps = 13/494 (3%) Strand=Plus/Plus Query 25816 ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGG 25874 || |||| |||||| ||||| | | |||||| | || || || |||| |||| Sbjct 12930 ATTAAGAAGAAGGCCGATTGGGCTGTTAGATGGATCCA-AGACAAAGAATCTACATTTGC 12988 Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934 | || || || || || |||||||| || || ||||| ||||| ||||| || || | Sbjct 12989 TCAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGGTTCATTCGCCTC 13048 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCA 25993 ||||||||||||||| || || ||| |||| || |||||| ||||||||||||| Sbjct 13049 TATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCT-TACTTTCTCCAACGAGCTCA 13107 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGC 26053 || | | ||||||||||| || | || || |||||||| |||| | || |||||| Sbjct 13108 TCTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTTCTCTTCTCG---CACTTGA 13164 Query 26054 TCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 || || | || | |||| | | |||||| ||||||||| || ||| Sbjct 13165 AGCATCGCCCAAGTAAACAAGCCGTTCAGGATGTCATCACAGAGGCTGTTACAATTGAGC 13224 Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATG 26172 |||| || | ||||||||| | || || ||| Sbjct 13225 AGGAATTCTTGACCGAAGCTCTTCCATGTGCTCTCCTTGGCATGAAC-TCGGATCTGATG 13283 Query 26173 AGCCAATACATTGAGTATGTGGCCGACCATCTGCT--GTGCCAGCTGGGACTCGCCAGAC 26230 | ||||||||||||| || || |||| ||| || |||| || || | | Sbjct 13284 AAACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCC--CTTGGTAATGAAAAGG 13341 Query 26231 TCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCA 26290 | ||| || | | ||||| |||||||| ||||||||||| || | | || ||||||| Sbjct 13342 TTTACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTTCTCTCGCTGGCAAGACCA 13401 Query 26291 ACTTCTTTGAAAAG 26304 ||||||| || ||| Sbjct 13402 ACTTCTTCGAGAAG 13415 Score = 84.2 bits (92), Expect = 4e-11 Identities = 162/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| | || ||||||||| |||||||| || || Sbjct 12536 ATTTGGCAGATGTACAAGAAGGCTGAGGCATCTTTCTGGACCGCAGAAGAGATCGACTTG 12595 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATT--TTC-TCAAG 25593 | ||||| | ||| |||| || | ||| ||||| ||| || ||| || Sbjct 12596 TCAAAGGATCTTCACGACTGGAACAACAGACTCAATGACGATGAGCGTTACTTCGTCTCT 12655 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | |||||||| || || |||||||| || || || ||||| || ||| | Sbjct 12656 CACGTCCTCGCATTCTTCGCCGCATCTGATGGAATTGTCAATGAGAACCTTGTCGAACGT 12715 Query 25654 TTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | || || ||| | | || || | | || ||||||||||||||||| Sbjct 12716 TTCAGTGGTGAGGTCCAGATCCCTGAAGCACGA-TGCTTCTACGGTTTCCAGAT 12768 >seq10763 Length=10051 Score = 107 bits (118), Expect = 4e-18 Identities = 373/578 (65%), Gaps = 12/578 (2%) Strand=Plus/Minus Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013 ||||||| ||||| || | || ||| ||| ||||| | ||| ||||| || || Sbjct 5009 TCAAACTCATCACCATAGACATCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTC 4950 Query 222014 CAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAG 222073 || | ||| | || || | || ||||||||| || || ||||| || || | |||| Sbjct 4949 CAATCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAG 4890 Query 222074 AGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAA 222133 || || | | || |||||| || | || || | ||||||||||||||||| Sbjct 4889 AGGTCGCGTGCTCGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAG 4830 Query 222134 ATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCC 222193 | || || ||||| || || || |||| ||| | || || || |||||||| ||||| Sbjct 4829 ACATCCGCATGCCATGGTTCAAGGTAGATGGCGAATGCACCAGGGCGCTTGTTACCACCT 4770 Query 222194 TGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGAT 222253 ||||| || || | | |||||| | ||||| | || || | ||||| || Sbjct 4769 TGATCGACATATCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAA 4710 Query 222254 CGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-----GCAGACA 222308 || || ||||| |||||| ||||| || | | | ||| | || | Sbjct 4709 TTTCCATTTGTGCCAGCAATGTATGCACCAGTAGCAC---GAATTCTGTGGATGTTGAGA 4653 Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368 || ||||| || || | || || |||||||| || |||| | ||| || || | Sbjct 4652 --CCAATACCTCCAGCATTCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTC 4595 Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT-TGGTG 222427 | || ||| |||||||| | || | || || || || || | || | || |||| Sbjct 4594 CATCAATACTATCCTCCTTCATGTCAATGAGGAAGCATGAAGAAAGTTGGGCTTGTGGT- 4536 Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487 | || ||| || || || ||| |||||||||||||| | ||||| | | | Sbjct 4535 GTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATTAAGTTG 4476 Query 222488 TACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT 222525 || || || | | | || |||| | || |||||||| Sbjct 4475 TAGGTTTCAATGGCGCTCTCGATATCATCACCGTGAAT 4438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928708062434880