Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq10338 125 1e-23
seq10763 107 4e-18
>seq10338
Length=29807
Score = 125 bits (138), Expect = 1e-23
Identities = 325/494 (66%), Gaps = 13/494 (3%)
Strand=Plus/Plus
Query 25816 ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGG 25874
|| |||| |||||| ||||| | | |||||| | || || || |||| ||||
Sbjct 12930 ATTAAGAAGAAGGCCGATTGGGCTGTTAGATGGATCCA-AGACAAAGAATCTACATTTGC 12988
Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934
| || || || || || |||||||| || || ||||| ||||| ||||| || || |
Sbjct 12989 TCAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGGTTCATTCGCCTC 13048
Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCA 25993
||||||||||||||| || || ||| |||| || |||||| |||||||||||||
Sbjct 13049 TATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCT-TACTTTCTCCAACGAGCTCA 13107
Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGC 26053
|| | | ||||||||||| || | || || |||||||| |||| | || ||||||
Sbjct 13108 TCTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTTCTCTTCTCG---CACTTGA 13164
Query 26054 TCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113
|| || | || | |||| | | |||||| ||||||||| || |||
Sbjct 13165 AGCATCGCCCAAGTAAACAAGCCGTTCAGGATGTCATCACAGAGGCTGTTACAATTGAGC 13224
Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATG 26172
|||| || | ||||||||| | || || |||
Sbjct 13225 AGGAATTCTTGACCGAAGCTCTTCCATGTGCTCTCCTTGGCATGAAC-TCGGATCTGATG 13283
Query 26173 AGCCAATACATTGAGTATGTGGCCGACCATCTGCT--GTGCCAGCTGGGACTCGCCAGAC 26230
| ||||||||||||| || || |||| ||| || |||| || || | |
Sbjct 13284 AAACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCC--CTTGGTAATGAAAAGG 13341
Query 26231 TCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCA 26290
| ||| || | | ||||| |||||||| ||||||||||| || | | || |||||||
Sbjct 13342 TTTACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTTCTCTCGCTGGCAAGACCA 13401
Query 26291 ACTTCTTTGAAAAG 26304
||||||| || |||
Sbjct 13402 ACTTCTTCGAGAAG 13415
Score = 84.2 bits (92), Expect = 4e-11
Identities = 162/234 (69%), Gaps = 5/234 (2%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| ||||||||||||||||| | || ||||||||| |||||||| || ||
Sbjct 12536 ATTTGGCAGATGTACAAGAAGGCTGAGGCATCTTTCTGGACCGCAGAAGAGATCGACTTG 12595
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATT--TTC-TCAAG 25593
| ||||| | ||| |||| || | ||| ||||| ||| || ||| ||
Sbjct 12596 TCAAAGGATCTTCACGACTGGAACAACAGACTCAATGACGATGAGCGTTACTTCGTCTCT 12655
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|||| | |||||||| || || |||||||| || || || ||||| || ||| |
Sbjct 12656 CACGTCCTCGCATTCTTCGCCGCATCTGATGGAATTGTCAATGAGAACCTTGTCGAACGT 12715
Query 25654 TTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|||| | || || ||| | | || || | | || |||||||||||||||||
Sbjct 12716 TTCAGTGGTGAGGTCCAGATCCCTGAAGCACGA-TGCTTCTACGGTTTCCAGAT 12768
>seq10763
Length=10051
Score = 107 bits (118), Expect = 4e-18
Identities = 373/578 (65%), Gaps = 12/578 (2%)
Strand=Plus/Minus
Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013
||||||| ||||| || | || ||| ||| ||||| | ||| ||||| || ||
Sbjct 5009 TCAAACTCATCACCATAGACATCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTC 4950
Query 222014 CAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAG 222073
|| | ||| | || || | || ||||||||| || || ||||| || || | ||||
Sbjct 4949 CAATCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAG 4890
Query 222074 AGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAA 222133
|| || | | || |||||| || | || || | |||||||||||||||||
Sbjct 4889 AGGTCGCGTGCTCGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAG 4830
Query 222134 ATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCC 222193
| || || ||||| || || || |||| ||| | || || || |||||||| |||||
Sbjct 4829 ACATCCGCATGCCATGGTTCAAGGTAGATGGCGAATGCACCAGGGCGCTTGTTACCACCT 4770
Query 222194 TGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGAT 222253
||||| || || | | |||||| | ||||| | || || | ||||| ||
Sbjct 4769 TGATCGACATATCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAA 4710
Query 222254 CGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-----GCAGACA 222308
|| || ||||| |||||| ||||| || | | | ||| | || |
Sbjct 4709 TTTCCATTTGTGCCAGCAATGTATGCACCAGTAGCAC---GAATTCTGTGGATGTTGAGA 4653
Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368
|| ||||| || || | || || |||||||| || |||| | ||| || || |
Sbjct 4652 --CCAATACCTCCAGCATTCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTC 4595
Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT-TGGTG 222427
| || ||| |||||||| | || | || || || || || | || | || ||||
Sbjct 4594 CATCAATACTATCCTCCTTCATGTCAATGAGGAAGCATGAAGAAAGTTGGGCTTGTGGT- 4536
Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487
| || ||| || || || ||| |||||||||||||| | ||||| | | |
Sbjct 4535 GTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATTAAGTTG 4476
Query 222488 TACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT 222525
|| || || | | | || |||| | || ||||||||
Sbjct 4475 TAGGTTTCAATGGCGCTCTCGATATCATCACCGTGAAT 4438
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928708062434880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |