Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq10370 141 6e-28
seq10174 113 3e-19
seq655 105 4e-17
seq10097 89.7 3e-12
>seq10370
Length=25047
Score = 141 bits (156), Expect = 6e-28
Identities = 363/548 (66%), Gaps = 6/548 (1%)
Strand=Plus/Plus
Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391
|| ||||| ||||| || || || ||| |||||||| | | | | ||| | | |
Sbjct 13306 ATCGGTATCGATTTGGGTACCACCTACTCTTGTGTAGGTATCTTCAGAGATGACAGAATC 13365
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
||||| ||||||||||||||||| || |||| || || || | ||| |||| || ||
Sbjct 13366 GAAATTATTGCCAATGACCAAGGAAACCGAACCACTCCTTCGTTCGTTGCTTTCACCGAT 13425
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
||||| | | | || |||||||| || || | |||| || || || ||| ||
Sbjct 13426 ACTGAGCGTTTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCATATAACACC 13485
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
| || ||||| || | || || || || || || | ||| | || ||| | |||
Sbjct 13486 GTCTTCGATGCCAAGCGTTTAATCGGACGCAAGTTCGCAGATGCTGAAGTACAAGCCGAT 13545
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629
||| |||| || || ||||| || | || ||| || ||| || || | |
Sbjct 13546 ATGAAGCATTTCCCATTCAAGGTCATTGACCGTGCTGGAAAGCCAGTCATTGAGGTTGAG 13605
Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689
| || | || ||| || ||||| |||| || | || || || ||||| || | ||
Sbjct 13606 TTCAAG--GGAGAACAAAAGCAATTCACACCTGAGGAGATCTCATCGATGGTCTTGGTCA 13663
Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748
| |||| | | || || ||| | || || || | || | | || || | |||
Sbjct 13664 AGATGAGAGAGACTGCTGAGG-CTTACCTCGGTGGAACTGTCAACAACGCTGTCGTCACT 13722
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
|| ||||| || || | ||||| ||||||||||| || || ||||| || |||||
Sbjct 13723 GTCCCAGCTTACTTCACCGATTCCCAACGTCAAGCCACAAAGGATGCTGGTCTGATTGCT 13782
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
|||||||| ||| | | || || || || || || |||||||| ||||||| ||| |
Sbjct 13783 GGTCTTAACGTTCTCAGAATCATCAACGAGCCTACCGCAGCCGCCATTGCTTACGGTTTG 13842
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 13843 GACAAGAA 13850
Score = 105 bits (116), Expect = 4e-17
Identities = 254/384 (66%), Gaps = 3/384 (1%)
Strand=Plus/Plus
Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852
|| |||||||| ||||||||||| || ||||| ||||| || || ||| | || ||| |
Sbjct 14452 AACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGGCCGCCATTCTCTCTGGTGAC 14511
Query 475853 ---TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909
||| | || || | || | ||| | || || | || | || | |||
Sbjct 14512 ACTTCATCCAAGTCCACCAACGAGATCCTTCTTCTCGATGTCGCGCCGTTGTCTCTCGGT 14571
Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969
|||| || | ||| || ||||| || || ||| | |||| || ||||||| |
Sbjct 14572 ATTGAGACTGCTGGTGGACAGATGACCAAGCTCATTCCCCGAAACACCACTATCCCTACC 14631
Query 475970 AAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATC 476029
|| ||||| |||| || ||||| | || || || ||| | ||| ||| ||| |
Sbjct 14632 AAGAAATCCGAAGTTTTCTCCACCTTCTCCGACAACCAACCTGGTGTGCTCATTCAAGTT 14691
Query 476030 TTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089
|| || ||||| | || ||| || || || ||| | || | || | |||
Sbjct 14692 TTCGAGGGTGAGCGTCAACGCACCAAGGACAACAACTTGATGGGTAAATTCGAACTTACT 14751
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
||||| || ||||| ||| | || ||||||||||| || || || || |||||||||||
Sbjct 14752 GGTATCCCACCTGCGCCCCGTGGTGTTCCTCAAATCGAGGTCACCTTCGATATTGATGCC 14811
Query 476150 AATGGTATTCTTAATGTTACTGCT 476173
|| ||||| | || || |||||
Sbjct 14812 AACGGTATCATGAACGTCTCTGCT 14835
>seq10174
Length=26070
Score = 113 bits (124), Expect = 3e-19
Identities = 127/170 (75%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|||||||| | |||||| | |||||||||||||||||| || || || | |||||||
Sbjct 24514 TTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGT 24573
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
|| || || |||||||| ||||||||||||||||| |||||| || ||||| ||
Sbjct 24574 TGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCGATAGTGTCG 24633
Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763
| | | |||||||| || || ||||| || | ||||| |||||
Sbjct 24634 GAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 24683
>seq655
Length=7676
Score = 105 bits (116), Expect = 4e-17
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| || || | ||| | || || || || | |||||||| | |||||
Sbjct 3248 ACGGAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGT 3307
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
||| || || | ||||||||| ||||| || | |||||||||||| || ||||| ||
Sbjct 3308 TCTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACC 3367
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||||||| |||||| || || ||||| ||||| | | | | || |||
Sbjct 3368 TTCCTTGTCTTGGATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCACTTCCAA 3427
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || || || | ||||||||| || |||||
Sbjct 3428 -CGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTG 3466
Score = 91.5 bits (100), Expect = 1e-12
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || ||||| || ||| || || | || || || | || ||
Sbjct 3989 ACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGT 4048
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | ||| ||||||||||| |||||||| || | ||| ||||| |||||||| || ||
Sbjct 4049 GCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGGATACC 4108
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||||| || |||||||| |||||| || ||||| || | | | |||||
Sbjct 4109 CTCCTTATCCTGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGATTCAACCTCAAG 4168
Query 480731 GGTAATAGTTTTACCGGT 480748
||| || || || |||||
Sbjct 4169 GGTGATGGTCTTGCCGGT 4186
Score = 87.8 bits (96), Expect = 1e-11
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| ||||| || ||||| || || | |||||| ||||||||||| || || |||||
Sbjct 3770 ATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCCTT 3829
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||||||||||| || || || ||||| || | | | ||||| || ||
Sbjct 3830 ATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTGAT 3889
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGA 480762
||| || ||||| |||||||| ||||
Sbjct 3890 AGTCTTTCCGGTAAGAGTCTTGACGA 3915
>seq10097
Length=29191
Score = 89.7 bits (98), Expect = 3e-12
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || | |||||||| || || || || || || ||||||||||| || |||||||
Sbjct 18288 ATGCTGTTGTCACTGTTCCCGCCTACTTCAACGACTCCCAACGTCAAGCGACCAAAGATG 18229
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || |||||| || | || ||| | | | | || || ||||| ||||| ||||
Sbjct 18228 CTGGTCAAATTGCCGGCTTGAACGTTCTTAGAGTGGTCAACGAGCCAACCGCAGCTGCAC 18169
Query 474855 TTGCTTATGGTCTTGATAA 474873
|||| ||||||||||| ||
Sbjct 18168 TTGCCTATGGTCTTGAGAA 18150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267674027327996
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |