Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq10370 141 6e-28 seq10174 113 3e-19 seq655 105 4e-17 seq10097 89.7 3e-12 >seq10370 Length=25047 Score = 141 bits (156), Expect = 6e-28 Identities = 363/548 (66%), Gaps = 6/548 (1%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 || ||||| ||||| || || || ||| |||||||| | | | | ||| | | | Sbjct 13306 ATCGGTATCGATTTGGGTACCACCTACTCTTGTGTAGGTATCTTCAGAGATGACAGAATC 13365 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| ||||||||||||||||| || |||| || || || | ||| |||| || || Sbjct 13366 GAAATTATTGCCAATGACCAAGGAAACCGAACCACTCCTTCGTTCGTTGCTTTCACCGAT 13425 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 ||||| | | | || |||||||| || || | |||| || || || ||| || Sbjct 13426 ACTGAGCGTTTGATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCATATAACACC 13485 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || ||||| || | || || || || || || | ||| | || ||| | ||| Sbjct 13486 GTCTTCGATGCCAAGCGTTTAATCGGACGCAAGTTCGCAGATGCTGAAGTACAAGCCGAT 13545 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| |||| || || ||||| || | || ||| || ||| || || | | Sbjct 13546 ATGAAGCATTTCCCATTCAAGGTCATTGACCGTGCTGGAAAGCCAGTCATTGAGGTTGAG 13605 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || ||| || ||||| |||| || | || || || ||||| || | || Sbjct 13606 TTCAAG--GGAGAACAAAAGCAATTCACACCTGAGGAGATCTCATCGATGGTCTTGGTCA 13663 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | | || || ||| | || || || | || | | || || | ||| Sbjct 13664 AGATGAGAGAGACTGCTGAGG-CTTACCTCGGTGGAACTGTCAACAACGCTGTCGTCACT 13722 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || ||||| || || | ||||| ||||||||||| || || ||||| || ||||| Sbjct 13723 GTCCCAGCTTACTTCACCGATTCCCAACGTCAAGCCACAAAGGATGCTGGTCTGATTGCT 13782 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 |||||||| ||| | | || || || || || || |||||||| ||||||| ||| | Sbjct 13783 GGTCTTAACGTTCTCAGAATCATCAACGAGCCTACCGCAGCCGCCATTGCTTACGGTTTG 13842 Query 474869 GATAAGAA 474876 || ||||| Sbjct 13843 GACAAGAA 13850 Score = 105 bits (116), Expect = 4e-17 Identities = 254/384 (66%), Gaps = 3/384 (1%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 || |||||||| ||||||||||| || ||||| ||||| || || ||| | || ||| | Sbjct 14452 AACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGGCCGCCATTCTCTCTGGTGAC 14511 Query 475853 ---TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909 ||| | || || | || | ||| | || || | || | || | ||| Sbjct 14512 ACTTCATCCAAGTCCACCAACGAGATCCTTCTTCTCGATGTCGCGCCGTTGTCTCTCGGT 14571 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 |||| || | ||| || ||||| || || ||| | |||| || ||||||| | Sbjct 14572 ATTGAGACTGCTGGTGGACAGATGACCAAGCTCATTCCCCGAAACACCACTATCCCTACC 14631 Query 475970 AAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATC 476029 || ||||| |||| || ||||| | || || || ||| | ||| ||| ||| | Sbjct 14632 AAGAAATCCGAAGTTTTCTCCACCTTCTCCGACAACCAACCTGGTGTGCTCATTCAAGTT 14691 Query 476030 TTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089 || || ||||| | || ||| || || || ||| | || | || | ||| Sbjct 14692 TTCGAGGGTGAGCGTCAACGCACCAAGGACAACAACTTGATGGGTAAATTCGAACTTACT 14751 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| || ||||| ||| | || ||||||||||| || || || || ||||||||||| Sbjct 14752 GGTATCCCACCTGCGCCCCGTGGTGTTCCTCAAATCGAGGTCACCTTCGATATTGATGCC 14811 Query 476150 AATGGTATTCTTAATGTTACTGCT 476173 || ||||| | || || ||||| Sbjct 14812 AACGGTATCATGAACGTCTCTGCT 14835 >seq10174 Length=26070 Score = 113 bits (124), Expect = 3e-19 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 |||||||| | |||||| | |||||||||||||||||| || || || | ||||||| Sbjct 24514 TTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATCAAACGTTGT 24573 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || |||||||| ||||||||||||||||| |||||| || ||||| || Sbjct 24574 TGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCGATAGTGTCG 24633 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 | | | |||||||| || || ||||| || | ||||| ||||| Sbjct 24634 GAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 24683 >seq655 Length=7676 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || | ||| | || || || || | |||||||| | ||||| Sbjct 3248 ACGGAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGT 3307 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 ||| || || | ||||||||| ||||| || | |||||||||||| || ||||| || Sbjct 3308 TCTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACC 3367 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||| |||||| || || ||||| ||||| | | | | || ||| Sbjct 3368 TTCCTTGTCTTGGATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCACTTCCAA 3427 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || | ||||||||| || ||||| Sbjct 3428 -CGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTG 3466 Score = 91.5 bits (100), Expect = 1e-12 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || ||||| || ||| || || | || || || | || || Sbjct 3989 ACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGT 4048 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||||||||| |||||||| || | ||| ||||| |||||||| || || Sbjct 4049 GCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGGATACC 4108 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||| || |||||||| |||||| || ||||| || | | | ||||| Sbjct 4109 CTCCTTATCCTGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGATTCAACCTCAAG 4168 Query 480731 GGTAATAGTTTTACCGGT 480748 ||| || || || ||||| Sbjct 4169 GGTGATGGTCTTGCCGGT 4186 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| ||||| || ||||| || || | |||||| ||||||||||| || || ||||| Sbjct 3770 ATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCCTT 3829 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||||||||||| || || || ||||| || | | | ||||| || || Sbjct 3830 ATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTGAT 3889 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGA 480762 ||| || ||||| |||||||| |||| Sbjct 3890 AGTCTTTCCGGTAAGAGTCTTGACGA 3915 >seq10097 Length=29191 Score = 89.7 bits (98), Expect = 3e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| || || || || || || ||||||||||| || ||||||| Sbjct 18288 ATGCTGTTGTCACTGTTCCCGCCTACTTCAACGACTCCCAACGTCAAGCGACCAAAGATG 18229 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || |||||| || | || ||| | | | | || || ||||| ||||| |||| Sbjct 18228 CTGGTCAAATTGCCGGCTTGAACGTTCTTAGAGTGGTCAACGAGCCAACCGCAGCTGCAC 18169 Query 474855 TTGCTTATGGTCTTGATAA 474873 |||| ||||||||||| || Sbjct 18168 TTGCCTATGGTCTTGAGAA 18150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267674027327996