Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq10129 141 1e-28 >seq10129 Length=31709 Score = 141 bits (156), Expect = 1e-28 Identities = 207/293 (71%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 139248 GCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCG 139307 || ||||| | ||||| | || |||||||| | ||||||||| || ||| || || Sbjct 8246 GCAATAGCCTTGAGTCCTTGTGGTCCATGATAAACAGCATAGAATGCACTCATGTTGGCT 8305 Query 139308 AGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCT 139367 |||| ||| || |||||||| | ||| || ||||| || ||||| | ||||| |||||| Sbjct 8306 AGCAATGCCTGCGCTGTGCAAACGTTGCTAGTTGCCTTTTCTCTCCGGATATGTTGCTCT 8365 Query 139368 CTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACA 139427 || ||||||| || ||||| ||| || ||| || ||| || ||| | Sbjct 8366 CTTGTTTGTAAGGCCAATCTCATTGCCTTATCACCTAATCTATCCTTGGATACACCGATG 8425 Query 139428 ATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGA 139487 || | || |||||||||| |||||||||||| | ||||||||||| ||||| ||| Sbjct 8426 ATACGTCCGGGTATCTTTCGCTTATACTTGTCACTAACCGCAAAGAATGCGGCATGGGGA 8485 Query 139488 CCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 || || ||||| | || | ||| || | ||| | | || | |||||||| Sbjct 8486 CCACCATATCCAAATGGTACACCGAAACGTTGAGCATTTCCAAATGCAATATC 8538 Score = 125 bits (138), Expect = 8e-24 Identities = 177/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| ||||| || || ||||| ||||| ||||||||||| ||||| || Sbjct 7115 ACACCAATAGGACCGACGCCTGGTCCACCACCACCATGAGGAATACAGAAAGTCTTGTGA 7174 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || ||||| || ||||| || ||| |||| |||| ||||| | |||||| Sbjct 7175 AGGTTAAGATGGCAGACATCAGCGCCAATCTCACCTGGTGAGCAAAGACCGATTTGTGCA 7234 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || |||||||| | ||||| ||||| |||| | |||||||| | || | | Sbjct 7235 TTCATGTTGGCACCATCCATGTATACTTGACCGCCATGTTGGTGAACGATATCGCA-AGC 7293 Query 138363 TG-TCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 | | |||| | | ||| ||||||||| || || ||||| ||||| ||| | Sbjct 7294 GGCTTTGATTTCCGGTTCGAATACACCAAATGTGCTAGGGTATGTGATCATGATAGCTCC 7353 Query 138422 GAGTTC 138427 |||||| Sbjct 7354 GAGTTC 7359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578913164198040