Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10763 262 5e-65 seq5810 114 2e-20 seq10051 82.4 9e-11 >seq10763 Length=10051 Score = 262 bits (290), Expect = 5e-65 Identities = 1156/1808 (64%), Gaps = 39/1808 (2%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| || |||| || ||||||| || | || || | || |||||||| | | Sbjct 4339 TACTTCGGATTCAAGACTCTTGAGA-GATCATACCTCCTCCGCCTCGATGGAAAAGTTGC 4397 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||||| | ||| | ||||| || || | || || ||||| || || || || Sbjct 4398 TGAACGTCCACAACAAATGATTATGCGTGTTGCCGTTGGTATTCACGGTGATGATATCGA 4457 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAA 75323 | | | || || ||| || |||||| | | || || | ||||| | |||| Sbjct 4458 GAGCGCCATTGAAACCTACAACTTAATGTCCAACAAATACTTT-ACACACGCTTCTCCAA 4516 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | |||||| || ||||||||| | | || | || |||||||| || | || | Sbjct 4517 CACTCTTCTCCGCGGGTACACCACAAGCCCAACTTTCTTCATGCTTCCTCATTGACATGA 4576 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 ||||||| || | || || |||| ||| | | | ||||| || || ||| Sbjct 4577 AGGAGGATAGTATTGATGGAATTTATGATACTTTGAAGATTTGTGCCATGATTTCTAAGA 4636 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503 ||||| |||||||| | ||||||| | | || | | | ||| | Sbjct 4637 ATGCTGGAGGTATTGGTCTCAACATCCACAGAATTCGTGCTACTGGTGCATACATTGCTG 4696 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | |||||||| | || | ||||| |||| |||||||| || || ||| || || Sbjct 4697 GCACAAATGGAAATTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAATACCGCTA 4756 Query 75564 GCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCAT-CGCGGTCTACTTGGAAC 75617 | ||||| |||||| || | |||| | || ||| ||| ||||| | |||| Sbjct 4757 GATATGTCGATCAAGGTGG---TAACAAGCGCCCTGGTGCATTCGCCATCTACCTTGAAC 4813 Query 75618 CATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGG 75677 |||||||||| ||| || | ||||| | || | ||| || || || | || || | Sbjct 4814 CATGGCATGCGGATGTCTTTGAGTTTTTGGATCTCCGAAAGAATCATGGAAAGGAGGAAG 4873 Query 75678 CTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTG 75737 ||| | || ||||||| |||| ||||||||||| || ||||||||||| |||| Sbjct 4874 TTCGAGCACGCGACCTCTTTTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTG 4933 Query 75738 AGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGG 75797 | || || | ||| | || | || || || | || || | | || | Sbjct 4934 AAAAGAACGGAGATTGGACACTCATGTGCCCCAACGAATGTCCTGGCTTGGCTGATGTCT 4993 Query 75798 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGA 75857 ||||| ||||||||||| || || || || | | |||| || | | || Sbjct 4994 ATGGTGATGAGTTTGAAGCTCTTTATGAGGGTTACGAGAAACAAGGTAAAGGCCGTAAGA 5053 Query 75858 CTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 || | | || | | | | ||||| | |||| ||| | ||||||| ||||| |||| Sbjct 5054 CTAT-CAAGGCTCAAAAGCTTTGGTATTCTATCCTCGAGGCACAGACTGAGACAGGAAAC 5112 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 || | ||||||||||| |||||||| ||||| ||||| || ||||||||| | || ||| Sbjct 5113 CCTTTCATGCTTTACAAAGATGCTTGCAACAAAAAGAGCAATCAAAAGAATCTCGGCACA 5172 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 ||| ||||| || | ||||||||||| | || ||| | | |||||| ||| Sbjct 5173 ATCCGCAGCTCCAACTTGTGCACGGAAATCGTCGAATACTCTGCACCTGATGAGGTTGCT 5232 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA---TGAAGAGACTCGCACT 76093 || |||||||| || || || || |||| | |||||| | ||| | ||| Sbjct 5233 TGCTGTAATTTGGCTTCTATTGCTCTCCCAACCTTTGTCAACATGGCCGAG---GGAACT 5289 Query 76094 TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTC 76153 | ||||| |||| ||||| || || | ||||| || ||| | ||| | Sbjct 5290 TATGATTTCCAAAAGCTTCACGAGGTCGTTCAAGTTGTTGTCAGAAACTTGAACAAGATT 5349 Query 76154 ATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 || || | |||| |||||||| || || ||| ||| | || || ||||| Sbjct 5350 ATCGATATCAATTACTATCCCGTCGAAGAAGCCAGAAGAAGCAATTTCCGTCATCGACCT 5409 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGAT 76273 |||| | | |||||||||||||| || |||| || | ||| | |||| ||| Sbjct 5410 ATTGCTGTTGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTCCGTTTACCATTCGAT 5469 Query 76274 TCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTG 76333 ||| ||||| ||| | | || | |||||||| ||||| || |||| | | | Sbjct 5470 TCACCCGAAGCGAAGCATCTCAACATCCAAATCTTTGAGACCATCTACCACG-GTGCTTT 5528 Query 76334 GAGGCGAGTTG-TGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCC 76392 || | || | | | || | | ||| | || ||| ||| ||| || ||||| Sbjct 5529 GACTTCATCTGTTCAGATAGCCAAGGAATTAGGCCCATACGAGTCATATGAAGGATCTCC 5588 Query 76393 CGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCTCAACTAC 76450 | ||| | || | |||||| | ||||||||||| || | || | | || | Sbjct 5589 AGTCTCCAAGGGTGAGCTTCAATATGATATGTGGG-GTGTTACTCCTACGGATC-TTTGG 5646 Query 76451 GACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATG 76510 || |||||| ||||||| || |||||| | | ||| | || || ||| | | | Sbjct 5647 GATTGGGATTCTCTCAAGCAATCTATCAAGCAACATGGTATCCGGAATAGTTTGCTTGTT 5706 Query 76511 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCA 76570 || || |||||||| ||| ||| | ||||| | ||| |||||||| || || ||| Sbjct 5707 GCTCCTATGCCAACTGCCAGCACATCTCAAATTCTCGGTTTCAATGAATGTTTCGAGCCA 5766 Query 76571 TACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAG 76630 ||||| | ||||| ||| | | | || |||||||| | || ||| Sbjct 5767 TACACTTCCAACATTTACTCACGCCGTGTGTTGGCCGGTGAGTTCCAAGTCGTTAACCCA 5826 Query 76631 CACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---TC 76687 || | || || | | || || || ||||| | | |||||| ||| || Sbjct 5827 TGGCTTCTTAAGGATTTGGTCGACATGGGACTTTGGTCTGATAACATGAAGAATCGTATC 5886 Query 76688 AT-GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAA 76746 || | ||| |||||||||||||||||||| | | || |||| || || || Sbjct 5887 ATCGCTGA----TGGTGGTTCCATTCAAAATATTCCCAACATTCCAGCCGAGATTAAAGC 5942 Query 76747 TCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATGGCCGCAGAT 76804 ||||||| || || ||||||| || | |||| | | || | ||||||||||| Sbjct 5943 TCTCTACAAGACCGTTTGGGAAATCTCTCAACGAAACA--TTGTTCAAATGGCCGCAGAC 6000 Query 76805 CGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATG 76864 |||||| |||||||||||| |||| ||||| | |||| | || || ||| Sbjct 6001 CGTGGTGCTTTCATTGATCAATCTCAATCGATGAACATTCACATGAAGGACCCTACAATG 6060 Query 76865 TCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTAC 76924 |||| || |||| |||||| | | |||||| ||| ||||| || ||||||||| Sbjct 6061 GGCAAGATCACTTCCATGCATTTCGCTGGATGGAAATTGGGTCTCAAGACTGGAATGTAC 6120 Query 76925 TATCTCCG 76932 |||||||| Sbjct 6121 TATCTCCG 6128 >seq5810 Length=707 Score = 114 bits (126), Expect = 2e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || |||||| | | ||||| |||||||| | || | ||||| ||||||||| Sbjct 479 TGGTATGCCATTCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCTACAAGGAT 538 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || || |||| |||||||||||| ||||| |||| || || ||||| || || ||| Sbjct 539 GCCTGCAACAGGAAGAGTAACCAGAAGAACCTGGGTACTATTCGCAGCTCTAACCTGTGC 598 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATC 76057 || || || | ||||||| | |||||| |||||||||||| |||| || || Sbjct 599 ACTGAGATCATTGAGTACAGTGCCCCTGATGAGGTGGCTGTTTGCAACCTGGCTTCCCTC 658 Query 76058 GCCCTTCC 76065 ||||| || Sbjct 659 GCCCTCCC 666 >seq10051 Length=55976 Score = 82.4 bits (90), Expect = 9e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 27790 CCAAATCCACCCGCACCTCTCTCTGTCTCTTCAAGAACACCAATTTCCTGCACATCGGGT 27849 ||||| || || ||||| | | | ||||||| | ||| | | |||| || || ||| Sbjct 28732 CCAAACCCTCCAGCACCCCGCACGCTCTCTTCCAAAACTTCCACTTCCATAACCTCAGGT 28673 Query 27850 GTTTCACAGCGCTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCT 27909 || | | | ||| | || | ||| || || ||||| || | ||| || || || ||| Sbjct 28672 GTATAAATCCTCTCCAACACCAATTGCGCAATACGATCTCCCTCCTTGACATCGAAATCT 28613 Query 27910 TTGTCTCCGTGATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACA 27969 || |||||||| ||||| || | ||||||||||| ||| ||| |||| || || || Sbjct 28612 TTCTCTCCGTGGTTGAACAGCAAGACTTTGACTTGTCCTCGATAATCGGCGTCGATTACT 28553 Query 27970 CCCGCACC 27977 || || || Sbjct 28552 CCGGCTCC 28545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596481777497760