Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq655 109 1e-18
>seq655
Length=7676
Score = 109 bits (120), Expect = 1e-18
Identities = 167/238 (70%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||| ||| |||||| | | ||||| |||| ||| || || ||| || || ||
Sbjct 3233 AATCTATTGACCACCACGGAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTT 3292
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||| || || | |||||| || || ||||| ||||||||||| || || | |||||
Sbjct 3293 ATAATCCGAAAGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTG 3352
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| || || || ||||| || ||||| || || || |||| || ||| ||||| ||
Sbjct 3353 ATCGGGTGGAATACCTTCCTTGTCTTGGATCTTTGTCTTTACGTTATCAATGGTATCTGA 3412
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || ||||| | || || || || || || | || || ||||| |||||||||
Sbjct 3413 CGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3470
Score = 86.0 bits (94), Expect = 1e-11
Identities = 164/241 (68%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | | || || |||| ||| | || | || || || || ||||||
Sbjct 3696 ATACCACCACGAAGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCG 3755
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | || | ||| || | |||||| || || || || || | || |||||||||
Sbjct 3756 GAAAGTGTGCGGCCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGA 3815
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || |||||||| || || || || | || ||||| || ||||| |||
Sbjct 3816 GGGATACCCTCCTTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCA 3875
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGTA 193370
|| || ||||| ||||| || || || || || || || | ||| ||| |||||||
Sbjct 3876 ACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGACTAT---GATTGAATTAGTA 3932
Query 193371 A 193371
|
Sbjct 3933 A 3933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899521959626640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |