Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq655 109 1e-18 >seq655 Length=7676 Score = 109 bits (120), Expect = 1e-18 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||| ||| |||||| | | ||||| |||| ||| || || ||| || || || Sbjct 3233 AATCTATTGACCACCACGGAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTT 3292 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || || | |||||| || || ||||| ||||||||||| || || | ||||| Sbjct 3293 ATAATCCGAAAGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTG 3352 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||| || ||||| || || || |||| || ||| ||||| || Sbjct 3353 ATCGGGTGGAATACCTTCCTTGTCTTGGATCTTTGTCTTTACGTTATCAATGGTATCTGA 3412 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| | || || || || || || | || || ||||| ||||||||| Sbjct 3413 CGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3470 Score = 86.0 bits (94), Expect = 1e-11 Identities = 164/241 (68%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || |||| ||| | || | || || || || |||||| Sbjct 3696 ATACCACCACGAAGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCG 3755 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | |||||| || || || || || | || ||||||||| Sbjct 3756 GAAAGTGTGCGGCCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGA 3815 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || |||||||| || || || || | || ||||| || ||||| ||| Sbjct 3816 GGGATACCCTCCTTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCA 3875 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGTA 193370 || || ||||| ||||| || || || || || || || | ||| ||| ||||||| Sbjct 3876 ACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGACTAT---GATTGAATTAGTA 3932 Query 193371 A 193371 | Sbjct 3933 A 3933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899521959626640