Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq655 143 5e-29
seq9962 91.5 3e-13
>seq655
Length=7676
Score = 143 bits (158), Expect = 5e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||||| | || ||||||||||| ||| || ||| |||||||| ||
Sbjct 3242 ACCACCACGGAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGA 3301
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
| |||| | || |||||||| || || |||||||| || | |||||||| |||||
Sbjct 3302 AAGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGG 3361
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| ||||| || ||||| || || | ||||| ||| || | |||||||||||| ||
Sbjct 3362 AATACCTTCCTTGTCTTGGATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCAC 3421
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||| | ||||| || || ||||| || || |||| ||| || ||||||
Sbjct 3422 TTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3470
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | |||||| | ||| ||||||||||| | || || ||| || |||||
Sbjct 3468 ATTCCACCACGAAGACGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCG 3527
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
||||| || || |||| ||||| || |||||||| || || | | || |||||||||
Sbjct 3528 GATAAGGTGCGGCCATCCTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGT 3587
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || |||||||| || ||| | || |||||| || | ||| ||||| ||
Sbjct 3588 GGGATGCCCTCCTTATCTTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCG 3647
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| |||| || || || || ||||| | || || | || ||||||||
Sbjct 3648 ACCTCTAATGTGATTGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697
Score = 93.3 bits (102), Expect = 8e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||| | | || ||||| | ||| | || || ||| || || ||
Sbjct 3696 ATACCACCACGAAGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCG 3755
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | ||| || |||| || | |||||||||||| ||||| || | || ||||||||
Sbjct 3756 GAAAGTGTGCGGCCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGA 3815
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || |||||||| || ||| | || || || |||| || || |||||
Sbjct 3816 GGGATACCCTCCTTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCA 3875
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512
|| || ||||| || || || || ||
Sbjct 3876 ACCTCAAGAGTGATAGTCTTTCCGGT 3901
Score = 93.3 bits (102), Expect = 8e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||| || | |||||| | || | ||| | ||||| ||| || ||| || || ||
Sbjct 3981 ATACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 4040
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| || | ||| || ||||||||||| || | |||||| |||||
Sbjct 4041 GAAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGA 4100
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || ||||| || || || | || ||||| |||| || || |||||
Sbjct 4101 GGGATACCCTCCTTATCCTGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGATTCA 4160
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512
|| || || || ||||| || || ||
Sbjct 4161 ACCTCAAGGGTGATGGTCTTGCCGGT 4186
>seq9962
Length=55051
Score = 91.5 bits (100), Expect = 3e-13
Identities = 133/187 (71%), Gaps = 1/187 (1%)
Strand=Plus/Plus
Query 192332 AATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391
||||||| || ||| || || ||||||||| || | ||| |||| ||||||
Sbjct 10920 AATGTAAGGTGCTCTCCTTTTGGAAATTATAATCTGAAAGAATTCTACCATCCTCCAATA 10979
Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451
||| || ||||| || |||| ||||| || ||||| || |||| || ||||| || |
Sbjct 10980 CTTT-CCTGCAAATATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGATCT 11038
Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511
| | | |||||| || | |||||||||||| ||||| | ||||| || || ||||
Sbjct 11039 TTGTCTGGACATTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAG 11098
Query 192512 TTAATGT 192518
| || ||
Sbjct 11099 TCAAGGT 11105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984331449043950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |