Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq655 143 5e-29 seq9962 91.5 3e-13 >seq655 Length=7676 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || ||||||||||| ||| || ||| |||||||| || Sbjct 3242 ACCACCACGGAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGA 3301 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| | || |||||||| || || |||||||| || | |||||||| ||||| Sbjct 3302 AAGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGG 3361 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || || | ||||| ||| || | |||||||||||| || Sbjct 3362 AATACCTTCCTTGTCTTGGATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCAC 3421 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| | ||||| || || ||||| || || |||| ||| || |||||| Sbjct 3422 TTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3470 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | ||| ||||||||||| | || || ||| || ||||| Sbjct 3468 ATTCCACCACGAAGACGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCG 3527 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| ||||| || |||||||| || || | | || ||||||||| Sbjct 3528 GATAAGGTGCGGCCATCCTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGT 3587 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || ||| | || |||||| || | ||| ||||| || Sbjct 3588 GGGATGCCCTCCTTATCTTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCG 3647 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| || || || || ||||| | || || | || |||||||| Sbjct 3648 ACCTCTAATGTGATTGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697 Score = 93.3 bits (102), Expect = 8e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| | | || ||||| | ||| | || || ||| || || || Sbjct 3696 ATACCACCACGAAGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCG 3755 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || | |||||||||||| ||||| || | || |||||||| Sbjct 3756 GAAAGTGTGCGGCCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGA 3815 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || ||| | || || || |||| || || ||||| Sbjct 3816 GGGATACCCTCCTTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCA 3875 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 || || ||||| || || || || || Sbjct 3876 ACCTCAAGAGTGATAGTCTTTCCGGT 3901 Score = 93.3 bits (102), Expect = 8e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | |||||| | || | ||| | ||||| ||| || ||| || || || Sbjct 3981 ATACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 4040 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | ||| || ||||||||||| || | |||||| ||||| Sbjct 4041 GAAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGA 4100 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || | || ||||| |||| || || ||||| Sbjct 4101 GGGATACCCTCCTTATCCTGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGATTCA 4160 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 || || || || ||||| || || || Sbjct 4161 ACCTCAAGGGTGATGGTCTTGCCGGT 4186 >seq9962 Length=55051 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/187 (71%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 192332 AATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||||||| || ||| || || ||||||||| || | ||| |||| |||||| Sbjct 10920 AATGTAAGGTGCTCTCCTTTTGGAAATTATAATCTGAAAGAATTCTACCATCCTCCAATA 10979 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 ||| || ||||| || |||| ||||| || ||||| || |||| || ||||| || | Sbjct 10980 CTTT-CCTGCAAATATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGATCT 11038 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | | | |||||| || | |||||||||||| ||||| | ||||| || || |||| Sbjct 11039 TTGTCTGGACATTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAG 11098 Query 192512 TTAATGT 192518 | || || Sbjct 11099 TCAAGGT 11105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984331449043950