Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq655 129 1e-24 seq9962 98.7 2e-15 >seq655 Length=7676 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || | || ||||||||||| ||| || || |||||||| || Sbjct 3242 ACCACCACGGAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGA 3301 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || |||| |||||||| || || ||||| || || | ||||| || ||||| Sbjct 3302 AAGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGG 3361 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| || || | ||||| ||| || |||||||||||||| || Sbjct 3362 AATACCTTCCTTGTCTTGGATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCAC 3421 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||| | ||||| || || ||||| || || |||| || || |||||| Sbjct 3422 TTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3470 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | ||| ||||||||||| | || || || || ||||| Sbjct 3468 ATTCCACCACGAAGACGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCG 3527 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || ||||| || |||||||| ||||| | | || || |||||| Sbjct 3528 GATAAGGTGCGGCCATCCTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGT 3587 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || ||| | || |||||| || ||||| ||||| || Sbjct 3588 GGGATGCCCTCCTTATCTTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCG 3647 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || || || || ||||| | || || | ||| |||||||| Sbjct 3648 ACCTCTAATGTGATTGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697 >seq9962 Length=55051 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/188 (73%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 171865 AATGTAAAGTAGCCTC-TTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAAT 171923 ||||||| || ||| ||| | || |||||||||||| | | || | || |||||| Sbjct 10920 AATGTAAGGTGCTCTCCTTTTGGAA-ATTATAATCTGAAAGAATTCTACCATCCTCCAAT 10978 Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||| || ||||| || |||| |||||||| ||||| || |||| || ||||| || Sbjct 10979 ACTTT-CCTGCAAATATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGATC 11037 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || | | |||||| || |||||||||||||| ||||| | ||||| || || ||| Sbjct 11038 TTTGTCTGGACATTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCA 11097 Query 172044 GTTAATGT 172051 || || || Sbjct 11098 GTCAAGGT 11105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905002752666600