Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1304 132 1e-25 seq10338 127 6e-24 seq11222 84.2 6e-11 seq5810 84.2 6e-11 >seq1304 Length=7141 Score = 132 bits (146), Expect = 1e-25 Identities = 226/328 (69%), Gaps = 0/328 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||| |||||| |||||| | ||||| ||||| | | ||||| | ||||||| Sbjct 2946 TTTCGTACGGTACCATCATATTTAGCCATAACATCTTCAAGAGCCTTGACAAGACGACGC 3005 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || |||||||||||| | || || || || |||||||| | ||| |||||||| || Sbjct 3006 TGGATATAACCAGTTTCTGCAGTCTTGACTGCAGTATCAATCAAACCTTCACGACCAGCC 3065 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 || || |||||||| | ||| || ||||| | || | | ||| | || |||||| Sbjct 3066 ATGGCGTGGAAGAAGAACTCGGTGGGAGTGAGCCCTCTAAGATACGAGTTTTCCACGAAA 3125 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 || | || || || |||| ||| |||||| || || || || || |||| || | Sbjct 3126 CCTCTCGATTCAGGAGAATAATCGTCCTTGGTGAAATGCGGAAGAGTTCTGTACTTGAAA 3185 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 ||| | || |||||||| || ||||| ||| || || | | || | |||||| ||| Sbjct 3186 CCGAAAGGAATACGCTTACCCTCAACTGACTGTTGACCGACGAGCGCAGACATCTGGGAA 3245 Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAG 302866 || || | | |||||||| |||| Sbjct 3246 ATGTTAATTGTAGAACCCTTGGAACCAG 3273 >seq10338 Length=29807 Score = 127 bits (140), Expect = 6e-24 Identities = 338/510 (66%), Gaps = 6/510 (1%) Strand=Plus/Plus Query 133439 CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGT 133498 ||||||||||| ||||| | || |||||| ||| ||||||||| ||||| | | Sbjct 12924 CCTTGTATTAAGAAGAAGGCCGATTGGGCTGTTAGATGGATCCAAGACAAAGAATCTACA 12983 Query 133499 TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTC 133558 |||||| |||||||| || || |||| || || || || || ||||||||| | ||| Sbjct 12984 TTTGCTCAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGGTTCATTC 13043 Query 133559 TGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAA 133618 |||||| || ||||| || ||||||||| | | | || || ||| || ||||| Sbjct 13044 GCCTCTATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTCCAACGAG 13103 Query 133619 CTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTA 133678 || || || | ||||||| ||||| ||||| || ||| | || ||| | || Sbjct 13104 CTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTTCTCTTCTCGCACTTG 13163 Query 133679 GAGCGACCACTCAAAAAGAATAAG--ATTGAAGAAATTATTAGAGAAGCGGTTGAAATTG 133736 ||| | | | ||| | || ||| || | || | || | ||| || ||| ||||| Sbjct 13164 AAGC-ATCGCCCAAGTA-AACAAGCCGTTCAGGATGTCATCACAGAGGCTGTTACAATTG 13221 Query 133737 AGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGA 133796 || ||||| | | ||||| || || | | |||| ||||| | |||| Sbjct 13222 AGCAGGAATTCTTGACCGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGATCTGA 13281 Query 133797 TGCAGCGTTATATTGAATTTGTAGCTGACAG-ATTGGCCGTTCAGTTAGGTGGGGATAAG 133855 || | | || ||||| || || || ||| | || | | | || ||| || ||| Sbjct 13282 TGAAACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCCCTT-GGTAATGAAAAG 13340 Query 133856 ATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGACT 133915 ||||| ||||| |||| |||||||||| ||||| | |||| | | ||||| Sbjct 13341 GTTTACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTTCTCTCGCTGGCAAGACC 13400 Query 133916 AATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945 || ||||||||| | | || || || ||| Sbjct 13401 AACTTCTTCGAGAAGCGTGTTGCTGATTAC 13430 >seq11222 Length=6659 Score = 84.2 bits (92), Expect = 6e-11 Identities = 217/322 (67%), Gaps = 8/322 (2%) Strand=Plus/Plus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 ||| |||| |||||||| || || ||||| || | ||| || | | | ||| || || Sbjct 3860 TTTTCCAATGGCATCAATCTCATCGATGAATATGATACAGGGTGTAGACTTTCTAGCCAT 3919 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 || || | || | ||| || || || |||| |||||| ||||||| ||||| ||||| Sbjct 3920 GGCGAAAAGATCACGTACTCGAGAAGCACCAACACCAACGAACATTTCAACAAACTCAGA 3979 Query 289146 AGCG--GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 | | || ||| ||| ||||| || | ||||| || || | || | |||| Sbjct 3980 ACCACTGACACT-GAA-GAATGGCACCCCGGACTCGCCGGCCGTCGCTTTTGCTAAAAGT 4037 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGC 289262 ||||||||||| || || || || ||||| | | || || | || || || ||| Sbjct 4038 GTCTTACCTGTACCCGGGGGCCCGGATAATATAGCACCGCGAGGAATCTTAGCACCTAGC 4097 Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 ||| ||| ||||||| |||||| || | || | |||| || || | |||||| Sbjct 4098 -CTCTTGAATTGCTCAGGGGTCTTTAGGAAGGCGACGAATTCCATAATCTCCTGTTTTGC 4156 Query 289323 CTCATCACAT-CCTGCTACATC 289343 || || ||| || || ||||| Sbjct 4157 TTCGTC-CATGCCAGCGACATC 4177 >seq5810 Length=707 Score = 84.2 bits (92), Expect = 6e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 155628 CTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGG 155687 ||||| || | |||||| |||||||||||| || || || || | ||||||||| Sbjct 618 CTGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGG 559 Query 155688 TTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGT 155747 ||| || ||||| || ||||||||||| || ||| | ||| | || ||||| |||| Sbjct 558 TTACTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGG 499 Query 155748 GCGTCCAGAAT 155758 || || ||||| Sbjct 498 GCCTCGAGAAT 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471595513302849