Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1304 132 1e-25
seq10338 127 6e-24
seq11222 84.2 6e-11
seq5810 84.2 6e-11
>seq1304
Length=7141
Score = 132 bits (146), Expect = 1e-25
Identities = 226/328 (69%), Gaps = 0/328 (0%)
Strand=Plus/Plus
Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598
|||| |||||| |||||| | ||||| ||||| | | ||||| | |||||||
Sbjct 2946 TTTCGTACGGTACCATCATATTTAGCCATAACATCTTCAAGAGCCTTGACAAGACGACGC 3005
Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658
|| |||||||||||| | || || || || |||||||| | ||| |||||||| ||
Sbjct 3006 TGGATATAACCAGTTTCTGCAGTCTTGACTGCAGTATCAATCAAACCTTCACGACCAGCC 3065
Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718
|| || |||||||| | ||| || ||||| | || | | ||| | || ||||||
Sbjct 3066 ATGGCGTGGAAGAAGAACTCGGTGGGAGTGAGCCCTCTAAGATACGAGTTTTCCACGAAA 3125
Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778
|| | || || || |||| ||| |||||| || || || || || |||| || |
Sbjct 3126 CCTCTCGATTCAGGAGAATAATCGTCCTTGGTGAAATGCGGAAGAGTTCTGTACTTGAAA 3185
Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838
||| | || |||||||| || ||||| ||| || || | | || | |||||| |||
Sbjct 3186 CCGAAAGGAATACGCTTACCCTCAACTGACTGTTGACCGACGAGCGCAGACATCTGGGAA 3245
Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAG 302866
|| || | | |||||||| ||||
Sbjct 3246 ATGTTAATTGTAGAACCCTTGGAACCAG 3273
>seq10338
Length=29807
Score = 127 bits (140), Expect = 6e-24
Identities = 338/510 (66%), Gaps = 6/510 (1%)
Strand=Plus/Plus
Query 133439 CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGT 133498
||||||||||| ||||| | || |||||| ||| ||||||||| ||||| | |
Sbjct 12924 CCTTGTATTAAGAAGAAGGCCGATTGGGCTGTTAGATGGATCCAAGACAAAGAATCTACA 12983
Query 133499 TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTC 133558
|||||| |||||||| || || |||| || || || || || ||||||||| | |||
Sbjct 12984 TTTGCTCAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGGTTCATTC 13043
Query 133559 TGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAA 133618
|||||| || ||||| || ||||||||| | | | || || ||| || |||||
Sbjct 13044 GCCTCTATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTCCAACGAG 13103
Query 133619 CTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTA 133678
|| || || | ||||||| ||||| ||||| || ||| | || ||| | ||
Sbjct 13104 CTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTTCTCTTCTCGCACTTG 13163
Query 133679 GAGCGACCACTCAAAAAGAATAAG--ATTGAAGAAATTATTAGAGAAGCGGTTGAAATTG 133736
||| | | | ||| | || ||| || | || | || | ||| || ||| |||||
Sbjct 13164 AAGC-ATCGCCCAAGTA-AACAAGCCGTTCAGGATGTCATCACAGAGGCTGTTACAATTG 13221
Query 133737 AGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGA 133796
|| ||||| | | ||||| || || | | |||| ||||| | ||||
Sbjct 13222 AGCAGGAATTCTTGACCGAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGATCTGA 13281
Query 133797 TGCAGCGTTATATTGAATTTGTAGCTGACAG-ATTGGCCGTTCAGTTAGGTGGGGATAAG 133855
|| | | || ||||| || || || ||| | || | | | || ||| || |||
Sbjct 13282 TGAAACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCCCTT-GGTAATGAAAAG 13340
Query 133856 ATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGACT 133915
||||| ||||| |||| |||||||||| ||||| | |||| | | |||||
Sbjct 13341 GTTTACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTTCTCTCGCTGGCAAGACC 13400
Query 133916 AATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945
|| ||||||||| | | || || || |||
Sbjct 13401 AACTTCTTCGAGAAGCGTGTTGCTGATTAC 13430
>seq11222
Length=6659
Score = 84.2 bits (92), Expect = 6e-11
Identities = 217/322 (67%), Gaps = 8/322 (2%)
Strand=Plus/Plus
Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085
||| |||| |||||||| || || ||||| || | ||| || | | | ||| || ||
Sbjct 3860 TTTTCCAATGGCATCAATCTCATCGATGAATATGATACAGGGTGTAGACTTTCTAGCCAT 3919
Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145
|| || | || | ||| || || || |||| |||||| ||||||| ||||| |||||
Sbjct 3920 GGCGAAAAGATCACGTACTCGAGAAGCACCAACACCAACGAACATTTCAACAAACTCAGA 3979
Query 289146 AGCG--GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203
| | || ||| ||| ||||| || | ||||| || || | || | ||||
Sbjct 3980 ACCACTGACACT-GAA-GAATGGCACCCCGGACTCGCCGGCCGTCGCTTTTGCTAAAAGT 4037
Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGC 289262
||||||||||| || || || || ||||| | | || || | || || || |||
Sbjct 4038 GTCTTACCTGTACCCGGGGGCCCGGATAATATAGCACCGCGAGGAATCTTAGCACCTAGC 4097
Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322
||| ||| ||||||| |||||| || | || | |||| || || | ||||||
Sbjct 4098 -CTCTTGAATTGCTCAGGGGTCTTTAGGAAGGCGACGAATTCCATAATCTCCTGTTTTGC 4156
Query 289323 CTCATCACAT-CCTGCTACATC 289343
|| || ||| || || |||||
Sbjct 4157 TTCGTC-CATGCCAGCGACATC 4177
>seq5810
Length=707
Score = 84.2 bits (92), Expect = 6e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 155628 CTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGG 155687
||||| || | |||||| |||||||||||| || || || || | |||||||||
Sbjct 618 CTGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGG 559
Query 155688 TTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGT 155747
||| || ||||| || ||||||||||| || ||| | ||| | || ||||| ||||
Sbjct 558 TTACTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGG 499
Query 155748 GCGTCCAGAAT 155758
|| || |||||
Sbjct 498 GCCTCGAGAAT 488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471595513302849
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |