Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq655 145 7e-30 seq10763 132 4e-26 seq10174 98.7 9e-16 seq9962 86.0 6e-12 >seq655 Length=7676 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||| || | || || || || |||||| | ||||| ||| | | Sbjct 3469 ATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAATCGTCA 3410 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| ||||||||||||||| ||||| || || ||||||||| Sbjct 3409 GATACCATTGATAACGTAAAGACAAAGATCCAAGACAAGGAAGGTATTCCACCCGATCAA 3350 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||||||||| || || ||||||| |||| | || ||||||||| Sbjct 3349 CAACGTTTGATCTTTGCCGGAAAGCAATTGGAGGACGGTAGAACTCTTTCGGATTATAAC 3290 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || |||||||| || |||| |||||| Sbjct 3289 ATCCAAAAGGAGAGCACTTTACATTTGGTG 3260 Score = 111 bits (122), Expect = 1e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AAC 24777 || || || ||||| || ||||| || || || || ||| | | ||||| | || ||| Sbjct 3910 AAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCGACAAC 3851 Query 24778 GGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTT 24837 | ||| || || ||| ||||| || || || || ||||| ||||| |||||||||||||| Sbjct 3850 GTTAAGACTAA-GATTCAAGATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTGATCTT 3792 Query 24838 TGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATC 24897 || || ||||| || || ||| | | | || || || ||||| ||||||||||| Sbjct 3791 CGCTGGTAAACAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCAAAAGGAATC 3732 Query 24898 GACACTACACTTGGT 24912 ||| || || ||||| Sbjct 3731 GACTCTCCATTTGGT 3717 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || | || || || | | Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| ||||| || || || || || || ||||| Sbjct 3637 GATACCATCGATAATGTGAAGACTAAGATTCAAGATAAGGAGGGCATCCCACCTGATCAG 3578 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || || || || ||| |||||||| | | | | || ||||| ||| Sbjct 3577 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACAAC 3518 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||||||||| |||| ||||| Sbjct 3517 ATCCAAAAGGAATCGACTTTACATTTGGT 3489 >seq10763 Length=10051 Score = 132 bits (146), Expect = 4e-26 Identities = 1047/1665 (63%), Gaps = 62/1665 (4%) Strand=Plus/Minus Query 138286 ATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCCATGTTAATTAAA 138345 ||||| | ||||||| ||||| |||||||| || || || |||||| | || || Sbjct 6038 ATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAAC--AA 5981 Query 138346 TTTTTACTTTTCA--TCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTG 138403 | ||| || | | ||||| ||||||||||| ||| | ||| | || | | || Sbjct 5980 TGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCG-GCTGGAATG 5922 Query 138404 TTGC-AATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTG 138462 ||| ||||||||||||| || | || ||||| ||||| |||||| ||| Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862 Query 138463 TACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCG 138522 | || || | || ||| || || | || || ||| | ||| || || |||||| Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802 Query 138523 GCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCC 138582 ||||| || || || |||||||||| ||| | ||||| || |||| ||| || Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742 Query 138583 AGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCG 138642 ||||| |||| ||| | || || ||||| || || | | | |||||| | ||| Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACCA 5682 Query 138643 TGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTC 138702 || ||||||| || |||||| || ||| ||||| | ||| |||| | | Sbjct 5681 TGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACACCC 5622 Query 138703 CACATATCGTACTGTAACATTCCCAAACTTGCGGGACTG-----CCTTCGTACGAATCGT 138757 |||||||| || || | | || |||| | ||||| ||||| || || |||| Sbjct 5621 CACATATCATATTG----AAGCTCACCCTTG-GAGACTGGAGATCCTTCATATGACTCGT 5567 Query 138758 ATACACCAAACTCTTGCGCCAACT-CGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTT 138816 || || || || | || | || | | || | ||||| | ||| || || Sbjct 5566 ATGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTC-AAAGCACCGTGGTAGATGGTC 5508 Query 138817 TCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATC 138876 || || || ||||| || |||| ||| | || | ||||| | Sbjct 5507 TCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGGTAAACGGAGAGCC 5448 Query 138877 GTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGAC 138936 ||| || || || || ||||| || || || | | ||| ||||| || | | ||| Sbjct 5447 AAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGA-AATTGCT 5389 Query 138937 GCTT-TTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCAC 138995 ||| | || |||||| ||||| || || | |||||| || ||||| || |||| || Sbjct 5388 TCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGAC 5329 Query 138996 GACCACCTTAGTCGTATGCTTTAATC-GTTCAAAATCGTATGTGCCCCCGTTGTCGTCGA 139054 | || ||| || | | || | || ||||| || || ||| ||| Sbjct 5328 -AACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCC---------TCGG 5279 Query 139055 CGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGG 139114 | | || |||||| | || | ||| || || | || || || || || || | Sbjct 5278 CCATGTTGACAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAG 5219 Query 139115 GGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTT 139174 | | ||||||||| ||||| | ||||| || | ||| || || | ||| | Sbjct 5218 GTGCAGAGTATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCT 5159 Query 139175 GTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCA 139234 ||||||||| ||| ||| |||||||||||||||||||| | || | || || || Sbjct 5158 TTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAG 5099 Query 139235 CTTGTGTCTCTATAAT-GAATTTGAACAAGTCCCTAG---CTTG-TA-TTTGACGCACGT 139288 |||| ||| | || |||| | ||| | | | |||| || | | ||| | | Sbjct 5098 TCTGTGCCTCGAGGATAGAAT---ACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTT 5042 Query 139289 AAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAG 139348 | || || |||||| || || || | || || ||||| ||| | |||| Sbjct 5041 TACCTT-GT--TTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAG 4985 Query 139349 AAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCC 139408 | | |||| | || || |||||||| | ||| | |||||| | || ||| Sbjct 4984 CCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCT 4925 Query 139409 TCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTC-- 139466 ||||||| ||||| |||||||| | || | | | ||||| || || | |||| Sbjct 4924 TCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGC--TC-GAACTTCCT 4868 Query 139467 CGAACCCATGTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCC 139524 | ||||| | | |||| | | | || ||||| || || || ||||||||||| Sbjct 4867 CCTTTCCATGATTC-TTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCA 4809 Query 139525 AGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCA 139581 || |||||||| | ||| || || ||| |||||||||||||| | || | | | Sbjct 4808 AGGTAGATGGCGAATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTA 4749 Query 139582 TTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG 139641 || ||||| || || | ||| || | | |||| | | |||| || |||| | ||| Sbjct 4748 TTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATG 4689 Query 139642 ---GGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTG 139698 | || | ||| || | || | |||| || || || || || || Sbjct 4688 TATGCACCAGT---AGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTA 4632 Query 139699 GATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATC 139758 || || | | ||| || || || || || || || || || |||| ||| Sbjct 4631 GAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATG 4572 Query 139759 GTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGA 139818 | || |||||||| |||||||| | | || || || || | || || || ||| Sbjct 4571 TCAATGAGGAAGCATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGA 4512 Query 139819 CTCGCGTGCGTGAA-CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAAT 139877 ||||| || || ||||| || ||||| || | ||| ||||| ||||||||| | || Sbjct 4511 GAAGCGTGTGTAAAGTATTTG-TTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGAT 4453 Query 139878 ATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 ||| ||||| ||||| || | || ||||| | ||| ||||| Sbjct 4452 ATCATCACCGTGAATACCAACGGCAACACGCATAATCATTTGTTG 4408 >seq10174 Length=26070 Score = 98.7 bits (108), Expect = 9e-16 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || ||||| || || || || || || ||| || ||||||| | || | || || Sbjct 24668 ACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCGACACTATCGACAATGTCAAGACC 24609 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| |||||||| || ||||| || || || ||||||||||||||||| ||||| || Sbjct 24608 AAGATTCAAGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTGATCTTCGCCGGAAAG 24549 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAAT 24896 || || || ||| | | | || ||||||||||| ||||||| || Sbjct 24548 CAACTTGAAGATGGACGCACTCTATCCGATTATAACATCCAAAAGGTAT 24500 >seq9962 Length=55051 Score = 86.0 bits (94), Expect = 6e-12 Identities = 120/167 (72%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || || || |||||| | ||||| ||| | | || || | || | || | | Sbjct 11099 ACTGGAAAGACAATTACGTTGGAAGTGGAATCGTCAGATACCATTGATAATGTCCAGACA 11040 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| |||| || || ||||| |||||||| ||||| |||| | ||||| Sbjct 11039 AAGATCCAAGACAAGGAAGATATTCCACCCGACCAACAACGATTGATATTTG-CAGGAAA 10981 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGA 24894 |||||||| |||| | ||||||||||| | |||||||| Sbjct 10980 GTATTGGAGGATGGTAGAATTCTTTCAGATTATAATTTCCAAAAGGA 10934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449831369449560