Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq655 145 7e-30
seq10763 132 4e-26
seq10174 98.7 9e-16
seq9962 86.0 6e-12
>seq655
Length=7676
Score = 145 bits (160), Expect = 7e-30
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| |||| || | || || || || |||||| | ||||| ||| | |
Sbjct 3469 ATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAATCGTCA 3410
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | ||||| ||||||||||||||| ||||| || || |||||||||
Sbjct 3409 GATACCATTGATAACGTAAAGACAAAGATCCAAGACAAGGAAGGTATTCCACCCGATCAA 3350
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||||||||||||||||| || || ||||||| |||| | || |||||||||
Sbjct 3349 CAACGTTTGATCTTTGCCGGAAAGCAATTGGAGGACGGTAGAACTCTTTCGGATTATAAC 3290
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913
|| |||||||| || |||| ||||||
Sbjct 3289 ATCCAAAAGGAGAGCACTTTACATTTGGTG 3260
Score = 111 bits (122), Expect = 1e-19
Identities = 143/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AAC 24777
|| || || ||||| || ||||| || || || || ||| | | ||||| | || |||
Sbjct 3910 AAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCGACAAC 3851
Query 24778 GGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTT 24837
| ||| || || ||| ||||| || || || || ||||| ||||| ||||||||||||||
Sbjct 3850 GTTAAGACTAA-GATTCAAGATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTGATCTT 3792
Query 24838 TGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATC 24897
|| || ||||| || || ||| | | | || || || ||||| |||||||||||
Sbjct 3791 CGCTGGTAAACAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCAAAAGGAATC 3732
Query 24898 GACACTACACTTGGT 24912
||| || || |||||
Sbjct 3731 GACTCTCCATTTGGT 3717
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || || | || || || | |
Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || ||||| ||||| || || || || || || |||||
Sbjct 3637 GATACCATCGATAATGTGAAGACTAAGATTCAAGATAAGGAGGGCATCCCACCTGATCAG 3578
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||| | || || || || || ||| |||||||| | | | | || ||||| |||
Sbjct 3577 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACAAC 3518
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| |||||||||||||| |||| |||||
Sbjct 3517 ATCCAAAAGGAATCGACTTTACATTTGGT 3489
>seq10763
Length=10051
Score = 132 bits (146), Expect = 4e-26
Identities = 1047/1665 (63%), Gaps = 62/1665 (4%)
Strand=Plus/Minus
Query 138286 ATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCCATGTTAATTAAA 138345
||||| | ||||||| ||||| |||||||| || || || |||||| | || ||
Sbjct 6038 ATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAAC--AA 5981
Query 138346 TTTTTACTTTTCA--TCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTG 138403
| ||| || | | ||||| ||||||||||| ||| | ||| | || | | ||
Sbjct 5980 TGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCG-GCTGGAATG 5922
Query 138404 TTGC-AATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTG 138462
||| ||||||||||||| || | || ||||| ||||| |||||| |||
Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862
Query 138463 TACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCG 138522
| || || | || ||| || || | || || ||| | ||| || || ||||||
Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802
Query 138523 GCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCC 138582
||||| || || || |||||||||| ||| | ||||| || |||| ||| ||
Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742
Query 138583 AGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCG 138642
||||| |||| ||| | || || ||||| || || | | | |||||| | |||
Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACCA 5682
Query 138643 TGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTC 138702
|| ||||||| || |||||| || ||| ||||| | ||| |||| | |
Sbjct 5681 TGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACACCC 5622
Query 138703 CACATATCGTACTGTAACATTCCCAAACTTGCGGGACTG-----CCTTCGTACGAATCGT 138757
|||||||| || || | | || |||| | ||||| ||||| || || ||||
Sbjct 5621 CACATATCATATTG----AAGCTCACCCTTG-GAGACTGGAGATCCTTCATATGACTCGT 5567
Query 138758 ATACACCAAACTCTTGCGCCAACT-CGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTT 138816
|| || || || | || | || | | || | ||||| | ||| || ||
Sbjct 5566 ATGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTC-AAAGCACCGTGGTAGATGGTC 5508
Query 138817 TCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATC 138876
|| || || ||||| || |||| ||| | || | ||||| |
Sbjct 5507 TCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGGTAAACGGAGAGCC 5448
Query 138877 GTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGAC 138936
||| || || || || ||||| || || || | | ||| ||||| || | | |||
Sbjct 5447 AAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGA-AATTGCT 5389
Query 138937 GCTT-TTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCAC 138995
||| | || |||||| ||||| || || | |||||| || ||||| || |||| ||
Sbjct 5388 TCTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGAC 5329
Query 138996 GACCACCTTAGTCGTATGCTTTAATC-GTTCAAAATCGTATGTGCCCCCGTTGTCGTCGA 139054
| || ||| || | | || | || ||||| || || ||| |||
Sbjct 5328 -AACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCC---------TCGG 5279
Query 139055 CGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGG 139114
| | || |||||| | || | ||| || || | || || || || || || |
Sbjct 5278 CCATGTTGACAAAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAG 5219
Query 139115 GGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTT 139174
| | ||||||||| ||||| | ||||| || | ||| || || | ||| |
Sbjct 5218 GTGCAGAGTATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCT 5159
Query 139175 GTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCA 139234
||||||||| ||| ||| |||||||||||||||||||| | || | || || ||
Sbjct 5158 TTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAG 5099
Query 139235 CTTGTGTCTCTATAAT-GAATTTGAACAAGTCCCTAG---CTTG-TA-TTTGACGCACGT 139288
|||| ||| | || |||| | ||| | | | |||| || | | ||| | |
Sbjct 5098 TCTGTGCCTCGAGGATAGAAT---ACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTT 5042
Query 139289 AAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAG 139348
| || || |||||| || || || | || || ||||| ||| | ||||
Sbjct 5041 TACCTT-GT--TTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAG 4985
Query 139349 AAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCC 139408
| | |||| | || || |||||||| | ||| | |||||| | || |||
Sbjct 4984 CCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCT 4925
Query 139409 TCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTC-- 139466
||||||| ||||| |||||||| | || | | | ||||| || || | ||||
Sbjct 4924 TCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGC--TC-GAACTTCCT 4868
Query 139467 CGAACCCATGTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCC 139524
| ||||| | | |||| | | | || ||||| || || || |||||||||||
Sbjct 4867 CCTTTCCATGATTC-TTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCA 4809
Query 139525 AGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCA 139581
|| |||||||| | ||| || || ||| |||||||||||||| | || | | |
Sbjct 4808 AGGTAGATGGCGAATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTA 4749
Query 139582 TTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG 139641
|| ||||| || || | ||| || | | |||| | | |||| || |||| | |||
Sbjct 4748 TTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATG 4689
Query 139642 ---GGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTG 139698
| || | ||| || | || | |||| || || || || || ||
Sbjct 4688 TATGCACCAGT---AGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTA 4632
Query 139699 GATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATC 139758
|| || | | ||| || || || || || || || || || |||| |||
Sbjct 4631 GAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATG 4572
Query 139759 GTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGA 139818
| || |||||||| |||||||| | | || || || || | || || || |||
Sbjct 4571 TCAATGAGGAAGCATGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGA 4512
Query 139819 CTCGCGTGCGTGAA-CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAAT 139877
||||| || || ||||| || ||||| || | ||| ||||| ||||||||| | ||
Sbjct 4511 GAAGCGTGTGTAAAGTATTTG-TTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGAT 4453
Query 139878 ATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922
||| ||||| ||||| || | || ||||| | ||| |||||
Sbjct 4452 ATCATCACCGTGAATACCAACGGCAACACGCATAATCATTTGTTG 4408
>seq10174
Length=26070
Score = 98.7 bits (108), Expect = 9e-16
Identities = 123/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787
|| ||||| || || || || || || ||| || ||||||| | || | || ||
Sbjct 24668 ACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCGACACTATCGACAATGTCAAGACC 24609
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
||||| |||||||| || ||||| || || || ||||||||||||||||| ||||| ||
Sbjct 24608 AAGATTCAAGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTGATCTTCGCCGGAAAG 24549
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAAT 24896
|| || || ||| | | | || ||||||||||| ||||||| ||
Sbjct 24548 CAACTTGAAGATGGACGCACTCTATCCGATTATAACATCCAAAAGGTAT 24500
>seq9962
Length=55051
Score = 86.0 bits (94), Expect = 6e-12
Identities = 120/167 (72%), Gaps = 1/167 (1%)
Strand=Plus/Minus
Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787
|| || || || |||||| | ||||| ||| | | || || | || | || | |
Sbjct 11099 ACTGGAAAGACAATTACGTTGGAAGTGGAATCGTCAGATACCATTGATAATGTCCAGACA 11040
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||||||||| |||| || || ||||| |||||||| ||||| |||| | |||||
Sbjct 11039 AAGATCCAAGACAAGGAAGATATTCCACCCGACCAACAACGATTGATATTTG-CAGGAAA 10981
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGA 24894
|||||||| |||| | ||||||||||| | ||||||||
Sbjct 10980 GTATTGGAGGATGGTAGAATTCTTTCAGATTATAATTTCCAAAAGGA 10934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449831369449560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |