Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq10174 113 3e-20 seq655 96.9 2e-15 >seq10174 Length=26070 Score = 113 bits (124), Expect = 3e-20 Identities = 140/187 (75%), Gaps = 10/187 (5%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || |||||||| || ||||| |||| |||| || ||||||||||||||||||| Sbjct 24503 CCTTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGA 24562 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT-TTGACGGAT 34906 ||| ||||| ||||| | || | ||||||||||| || | | || || ||||| || Sbjct 24563 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTC-TTGAATCTTGGTCTTGAC--AT 24619 Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 | ||||| || || ||||| |||| ||| |||||||| ||||| | |||||| Sbjct 24620 --TGTCGATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTT 24677 Query 34963 TACAAAG 34969 || ||| Sbjct 24678 GACGAAG 24684 >seq655 Length=7676 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/196 (72%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || ||||| || || |||| | |||| |||| |||| ||||| || ||||| Sbjct 3507 TCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCCATCCTCCAACTGCTTACCAGCGAAA 3566 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT-TTGACGGA 34905 || || |||||||| || | || | |||||||| || || | | || || || || | Sbjct 3567 ATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTTATC-TTGAATCTTAGTCTTCAC--A 3623 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | ||||||| ||| | |||||| || | || || |||||||| || ||||||| Sbjct 3624 T--TATCGATGGTATCAGACGACTCGACCTCTAATGTGATTGTCTTTCCAGTAAGGGTCT 3681 Query 34962 TTACAAAGATCTGCAT 34977 | || ||||||||||| Sbjct 3682 TGACGAAGATCTGCAT 3697 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840 ||||||||||| || |||||||| ||||| || | | | || |||| |||||||||| Sbjct 3273 GTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTCCTCCAATTGCTTTCCG 3332 Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 || ||||||| ||||| || || | || | || |||||||| | || ||| || Sbjct 3333 GCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCTTGGATCTTTGTCTTT 3392 Query 34901 ACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960 ||| | || | || | || || || | || || |||||||| || | ||| Sbjct 3393 ACGTTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGTC 3452 Query 34961 TTTACAAAGATCTGCAT 34977 || |||||||| ||||| Sbjct 3453 TTAACAAAGATTTGCAT 3469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325646052599963