Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq10174 113 3e-20
seq655 96.9 2e-15
>seq10174
Length=26070
Score = 113 bits (124), Expect = 3e-20
Identities = 140/187 (75%), Gaps = 10/187 (5%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
|||| || |||||||| || ||||| |||| |||| || |||||||||||||||||||
Sbjct 24503 CCTTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGA 24562
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT-TTGACGGAT 34906
||| ||||| ||||| | || | ||||||||||| || | | || || ||||| ||
Sbjct 24563 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTC-TTGAATCTTGGTCTTGAC--AT 24619
Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962
| ||||| || || ||||| |||| ||| |||||||| ||||| | ||||||
Sbjct 24620 --TGTCGATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTT 24677
Query 34963 TACAAAG 34969
|| |||
Sbjct 24678 GACGAAG 24684
>seq655
Length=7676
Score = 96.9 bits (106), Expect = 2e-15
Identities = 142/196 (72%), Gaps = 10/196 (5%)
Strand=Plus/Plus
Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846
||||| || ||||| || || |||| | |||| |||| |||| ||||| || |||||
Sbjct 3507 TCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCCATCCTCCAACTGCTTACCAGCGAAA 3566
Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT-TTGACGGA 34905
|| || |||||||| || | || | |||||||| || || | | || || || || |
Sbjct 3567 ATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTTATC-TTGAATCTTAGTCTTCAC--A 3623
Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961
| ||||||| ||| | |||||| || | || || |||||||| || |||||||
Sbjct 3624 T--TATCGATGGTATCAGACGACTCGACCTCTAATGTGATTGTCTTTCCAGTAAGGGTCT 3681
Query 34962 TTACAAAGATCTGCAT 34977
| || |||||||||||
Sbjct 3682 TGACGAAGATCTGCAT 3697
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840
||||||||||| || |||||||| ||||| || | | | || |||| ||||||||||
Sbjct 3273 GTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTCCTCCAATTGCTTTCCG 3332
Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900
|| ||||||| ||||| || || | || | || |||||||| | || ||| ||
Sbjct 3333 GCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCTTGGATCTTTGTCTTT 3392
Query 34901 ACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960
||| | || | || | || || || | || || |||||||| || | |||
Sbjct 3393 ACGTTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGTC 3452
Query 34961 TTTACAAAGATCTGCAT 34977
|| |||||||| |||||
Sbjct 3453 TTAACAAAGATTTGCAT 3469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325646052599963
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |