Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq655 127 2e-24 seq10174 102 6e-17 >seq655 Length=7676 Score = 127 bits (140), Expect = 2e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||||||| || || ||||| ||||| ||||| || || | || ||||| ||| Sbjct 3714 AGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCT 3773 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 ||||||||||| ||||| | ||||| | ||||||||| || || |||||||| || ||| Sbjct 3774 TCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCCTTATCT 3833 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || || || || | || | |||||| ||| ||| || |||||||| ||||| Sbjct 3834 TG-AATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTGATAGT 3892 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATAT 29780 || || || | || || || | ||| Sbjct 3893 CTTTCCGGTAAGAGTCTTGACGACTAT 3919 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||||||| | ||| || ||||| ||||||||||||| || || | | Sbjct 3254 ACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTTCTACC 3313 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||| || || ||| | ||||| | ||| ||||| || |||||||| || || Sbjct 3314 GTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCCTT 3373 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| || ||||| || || | || | || || || ||| ||||| | || | Sbjct 3374 GTCTTG-GATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCACTTCCAACGTAA 3432 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || ||||| || || |||||||| || |||||| Sbjct 3433 TTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3470 >seq10174 Length=26070 Score = 102 bits (112), Expect = 6e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658 ||||| ||||||||||| | | ||||| ||| || ||||| || || || | ||| Sbjct 24505 TTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATC 24564 Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTC 29717 || | ||| || ||||| ||||| ||||| |||||||| ||| || || |||||| | || Sbjct 24565 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTG-AATCTTGGTCTTGACATTGTC 24623 Query 29718 TACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 | |||||| || ||| || ||||| || || || || || || ||||| || || || Sbjct 24624 GATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 24683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385163908645557