Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq655 127 2e-24
seq10174 102 6e-17
>seq655
Length=7676
Score = 127 bits (140), Expect = 2e-24
Identities = 154/207 (74%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634
|| |||||||| || || ||||| ||||| ||||| || || | || ||||| |||
Sbjct 3714 AGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCT 3773
Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694
||||||||||| ||||| | ||||| | ||||||||| || || |||||||| || |||
Sbjct 3774 TCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCCTTATCT 3833
Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| ||| || || || || | || | |||||| ||| ||| || |||||||| |||||
Sbjct 3834 TG-AATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTGATAGT 3892
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATAT 29780
|| || || | || || || | |||
Sbjct 3893 CTTTCCGGTAAGAGTCTTGACGACTAT 3919
Score = 111 bits (122), Expect = 1e-19
Identities = 157/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| ||||||||||| | ||| || ||||| ||||||||||||| || || | |
Sbjct 3254 ACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTTCTACC 3313
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || | ||| || || ||| | ||||| | ||| ||||| || |||||||| || ||
Sbjct 3314 GTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCCTT 3373
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| || ||||| || || | || | || || || ||| ||||| | || |
Sbjct 3374 GTCTTG-GATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCACTTCCAACGTAA 3432
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
| || || ||||| || || |||||||| || ||||||
Sbjct 3433 TTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3470
>seq10174
Length=26070
Score = 102 bits (112), Expect = 6e-17
Identities = 132/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658
||||| ||||||||||| | | ||||| ||| || ||||| || || || | |||
Sbjct 24505 TTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATC 24564
Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTC 29717
|| | ||| || ||||| ||||| ||||| |||||||| ||| || || |||||| | ||
Sbjct 24565 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTG-AATCTTGGTCTTGACATTGTC 24623
Query 29718 TACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777
| |||||| || ||| || ||||| || || || || || || ||||| || || ||
Sbjct 24624 GATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 24683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385163908645557
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |