Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq10370 156 3e-32 seq1304 123 2e-22 seq10097 95.1 9e-14 seq1669 89.7 4e-12 >seq10370 Length=25047 Score = 156 bits (172), Expect = 3e-32 Identities = 459/700 (66%), Gaps = 8/700 (1%) Strand=Plus/Minus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || ||||| ||||| ||||| ||||| ||||| | ||| | |||| || | | || Sbjct 14000 ACCAGACGGTTATCGAAATCCTCACCACCCAAGTGAGTGTCACCTGCAGTGGACTTGACC 13941 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | || || || | || || |||| ||||| |||||| ||||| | ||| Sbjct 13940 TCGAAGATACCTTCCTCGATAGTCAGGAGAGAGACATCGAAGGTTCCTCCACCAAGATCG 13881 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || ||||| ||||| ||| || || || || | ||| || |||| || || Sbjct 13880 AAGATAAGAACATTACGTTCACCCTCGACCTTCTTGTCCAAACCGTAAGCAATGGCGGCT 13821 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || || || || || ||||| | ||| |||||||||||||| || ||||| || Sbjct 13820 GCGGTAGGCTCGTTGATGATTCTGAGAACGTTAAGACCAGCAATCAGACCAGCATCCTTT 13761 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-AC 282480 |||||||| | ||| |||||| | || || || || ||||| | || || | |||| || Sbjct 13760 GTGGCTTGACGTTGGGAATCGGTGAAGTAAGCTGGGACAGTGACGACAGCGT-TGTTGAC 13702 Query 282481 TTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 282540 | || | ||||| || || | | |||| || || | ||| ||||| || Sbjct 13701 AGTTCCACCGAGGTAAGCCTCAGCAGTCTCTCTCATCTTGACCAAGACCATCGATGAGAT 13642 Query 282541 TTGTTCTGGAGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTAT 282599 | || || | ||||||| ||| |||| | | || |||| ||| || Sbjct 13641 CTCCTCAGGTGTGAATTGCTTTTGTTCTCCCTTGAACTCA-ACCTCAATGACTGGCTTTC 13583 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG--TC 282657 | || | ||| || || ||||| ||| |||||||| | ||| |||| | || Sbjct 13582 CAGCACGGTCAATGACCTTGAATGGGAAATGCTTCATATCGGCTTG--TACTTCAGCATC 13525 Query 282658 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGC 282717 || | | || ||||| || || ||||| || | || || ||| || | || Sbjct 13524 TGCGAACTTGCGTCCGATTAAACGCTTGGCATCGAAGACGGTGTTATATGGGTTCATGGC 13465 Query 282718 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 282777 |||| | ||||| |||||||| |||| | | || || || || || | ||| | || Sbjct 13464 GACTTGGTTCTTGGCGGCATCTCCGATCAAACGCTCAGTATCGGTGAAAGCAACGAACGA 13405 Query 282778 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 282837 ||||| || || || ||||| ||||| ||||||||||| | | | ||| | | | Sbjct 13404 AGGAGTGGTTCGGTTTCCTTGGTCATTGGCAATAATTTCGATTCTGTCATCTCTGAAGAT 13345 Query 282838 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 282877 |||||||||| | || || || ||||| ||||| ||| Sbjct 13344 ACCTACACAAGAGTAGGTGGTACCCAAATCGATACCGATA 13305 Score = 116 bits (128), Expect = 3e-20 Identities = 248/368 (67%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| |||||||| | ||| || ||||| || |||||||| || || | | |||||| Sbjct 14819 ATACCGTTGGCATCAATATCGAAGGTGACCTCGATTTGAGGAACACCACGGGGCGCAGGT 14760 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | ||| | |||| || || || || ||| || || ||| Sbjct 14759 GGGATACCAGTAAGTTCGAATTTACCCATCAAGTTGTTGTCCTTGGTGCGTTGACGCTCA 14700 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||||||| ||| || || ||| ||| || || || | || | || ||| | Sbjct 14699 CCCTCGAAAACTTGAATGAGCACACCAGGTTGGTTGTCGGAGAAGGTGGAGAAAACTTCG 14640 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 ||||| || ||| || || ||||||| ||| | |||||||| |||||||| Sbjct 14639 GATTTCTTGGTAGGGATAGTGGTGTTTCGGGGAATGAGCTTGGTCATCTGTCCACCAGCA 14580 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| ||||| | || | |||||| | || | || | || | | || Sbjct 14579 GTCTCAATACCGAGAGACAACGGCGCGACATCGAGAAGAAGGATCTCGTTGGTGGACTTG 14520 Query 281739 CAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 || ||| | |||| ||||| || || || | |||||||| ||||||||||| ||| Sbjct 14519 GATGAAGTGTCACCAGAGAGAATGGCGGCCTGGACGGCAGCACCGTATGCAACAGCCTCA 14460 Query 281798 TCAGGATT 281805 ||||| || Sbjct 14459 TCAGGGTT 14452 >seq1304 Length=7141 Score = 123 bits (136), Expect = 2e-22 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 432288 ggTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 || || || || ||| || | ||||||||||||||||| ||||||||| | ||||| ||| Sbjct 4528 GGAAAGGAGGGACGTCTTCGTGGAAATTTGATGGGAAAACGTGTCGATTTCTCTGCGCGT 4469 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || || ||| |||||||||| || |||| ||||||| |||||||| | | ||| Sbjct 4468 ACTGTCATCACTGGTGATCCTAATCTTTCTCTTGATGAAGTCGGTGTTCCACGAAGTATC 4409 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAT 432455 || | || ||| || || ||| | ||||||| || ||||||||| Sbjct 4408 GCTAGAATTCTCACATTCCCCGAGACTGTAACACCACTCAATATTGAT 4361 Score = 95.1 bits (104), Expect = 9e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || || |||||||| | |||||||||||||||||| | ||| |||| || | || ||| Sbjct 3085 GAGTTCTTCTTCCACGCCATGGCTGGTCGTGAAGGTTTGATTGATACTGCAGTCAAGACT 3026 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 || || ||||||||||| || | ||||||||| ||||||||| ||| || Sbjct 3025 GCAGAAACTGGTTATATCCAGCGTCGTCTTGTCAAGGCTCTTGAAGATGTTATGGCTAAA 2966 Query 435253 TATGATGGTACAGTGAGAAA 435272 ||||||||||| || |||| Sbjct 2965 TATGATGGTACCGTACGAAA 2946 >seq10097 Length=29191 Score = 95.1 bits (104), Expect = 9e-14 Identities = 195/287 (68%), Gaps = 10/287 (3%) Strand=Plus/Plus Query 282189 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248 || |||| ||||||||||||||||| | |||| || |||| | |||| ||| | Sbjct 18010 GAATATCGAAATCTTCACCTCCCAAGTGGGTATCACCATTGGTAGACTTGACTTCGAATA 18069 Query 282249 GTCCATCTTCAAGA--GACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 || | | || || || |||| | |||| ||| || ||||||| ||| | | Sbjct 18070 CACCCTTCTGAATCTCGAGAACAGAG--ATATCAAAGGTACCTCCACCCAAATCGTAGAC 18127 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 | | | || | |||| | | ||| ||||||||||| |||| ||||| || || Sbjct 18128 ---TGCGATGATCT---TGTCCTCATCTTTCTCAAGACCATAGGCAAGTGCAGCTGCGGT 18181 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 ||| || || | | ||| | ||| || | || |||||| || |||||||| || || Sbjct 18182 TGGCTCGTTGACCACTCTAAGAACGTTCAAGCCGGCAATTTGACCAGCATCTTTGGTCGC 18241 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 ||| | ||| || ||||| || || || |||||||| | ||| |||| Sbjct 18242 TTGACGTTGGGAGTCGTTGAAGTAGGCGGGAACAGTGACAACAGCAT 18288 >seq1669 Length=9415 Score = 89.7 bits (98), Expect = 4e-12 Identities = 187/278 (67%), Gaps = 7/278 (3%) Strand=Plus/Minus Query 282199 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 282258 ||| | ||||||||| | ||| | || | ||||| | || ||| | ||| ||| Sbjct 3346 ATCCTGACCTCCCAAGTGAGTGTCACCAGCAGTAGCCTTAACGGTGAAGACACCACCTTG 3287 Query 282259 AAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT 282318 || ||| || | |||||| ||||||||||| | |||| | ||||| || || Sbjct 3286 AATGTTCAAGAGGGAAACATCGAAAGTTCCACCACCGAGATCATAGATAAGAACGTTTCG 3227 Query 282319 TTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 || ||| ||||| ||| | | ||||| || || | |||||||| || ||||| Sbjct 3226 CTCCTTG--TTGGTCTTTCCAGCACCGAGACCGTATGCGATGGCAGCAGCGGTAGGTTCG 3169 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433 || || || | | ||| || || |||||||| || ||||| || || ||||| | Sbjct 3168 TTGATGATACGGAGAACGTTGAGGCCAGCAATGGCACCAGCATCCTTGGTAGCTTGACGC 3109 Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 || ||||| || || || |||||||| || ||||| Sbjct 3108 TGGTTGTCGTTGAAGTAGGCTGGAACAGTGATGACGGC 3071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740052199069602