Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq655 114 3e-20
seq9962 113 9e-20
seq10174 107 4e-18
>seq655
Length=7676
Score = 114 bits (126), Expect = 3e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658
||||| || || ||||| ||||| || || || || || || || || | | || |||
Sbjct 3714 AGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCT 3773
Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718
|| |||||||| ||||| ||||| | | ||| ||||| ||||| || || |||||||||
Sbjct 3774 TCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCCTTATCT 3833
Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778
|||||||| | || || || || || || || || ||| || || | ||| || |||
Sbjct 3834 TGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTGATAGTC 3893
Query 82779 TTGCCTGTCAACGTCTTTACAAATAT 82804
|| || || | ||||| || | |||
Sbjct 3894 TTTCCGGTAAGAGTCTTGACGACTAT 3919
Score = 105 bits (116), Expect = 1e-17
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || || || | ||| ||||| || || || || ||||| |||| | | ||
Sbjct 3482 ACGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCC 3541
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || | || || ||||| || || || | ||| ||||| || || || || |||||
Sbjct 3542 ATCCTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTT 3601
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
|||||||||||| | || ||||| || || |||||| | || || || || || ||
Sbjct 3602 ATCTTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACCTCTAATGTGAT 3661
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || | ||||| || || ||||||||
Sbjct 3662 TGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697
Score = 100 bits (110), Expect = 6e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || | || |||||||| || ||||| || || || || |
Sbjct 3982 TACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGG 4041
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || || || ||||| || ||||||||||| | | ||||| || ||||
Sbjct 4042 AAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAG 4101
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || |||||||| |||||||| | || ||||| || || || || || ||| |
Sbjct 4102 GGATACCCTCCTTATCCTGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGATTCAA 4161
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786
| || | || || |||||||| ||
Sbjct 4162 CCTCAAGGGTGATGGTCTTGCCGGT 4186
>seq9962
Length=55051
Score = 113 bits (124), Expect = 9e-20
Identities = 130/174 (75%), Gaps = 1/174 (1%)
Strand=Plus/Plus
Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679
|| || || | ||||||||| || ||||||||||| || || | | ||||| |||||
Sbjct 10934 TCCTTTTGGAAATTATAATCTGAAAGAATTCTACCATCCTCCA-ATACTTTCCTGCAAAT 10992
Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739
|| | || |||||| || || || || ||||||| ||||| ||||||| | |||||
Sbjct 10993 ATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGATCTTTGTCTGGACATTA 11052
Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793
||||| ||||| | ||| |||||||| || || ||||| || ||||| |||
Sbjct 11053 TCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAGGTC 11106
>seq10174
Length=26070
Score = 107 bits (118), Expect = 4e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682
|| || || |||||||| |||||| | | || ||||| ||||| ||||| || |||||
Sbjct 24505 TTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATC 24564
Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742
| | |||||| || || || ||||| ||||| ||||||||||| | || ||||| ||
Sbjct 24565 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 24624
Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801
|| || || | ||| || || | || || ||||| || ||||| ||||| || ||
Sbjct 24625 ATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 24683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981679049332403
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |