Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq655 114 3e-20 seq9962 113 9e-20 seq10174 107 4e-18 >seq655 Length=7676 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| || || ||||| ||||| || || || || || || || || | | || ||| Sbjct 3714 AGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCT 3773 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || |||||||| ||||| ||||| | | ||| ||||| ||||| || || ||||||||| Sbjct 3774 TCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCCTTATCT 3833 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| | || || || || || || || || ||| || || | ||| || ||| Sbjct 3834 TGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTGATAGTC 3893 Query 82779 TTGCCTGTCAACGTCTTTACAAATAT 82804 || || || | ||||| || | ||| Sbjct 3894 TTTCCGGTAAGAGTCTTGACGACTAT 3919 Score = 105 bits (116), Expect = 1e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || || || | ||| ||||| || || || || ||||| |||| | | || Sbjct 3482 ACGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCC 3541 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | || || ||||| || || || | ||| ||||| || || || || ||||| Sbjct 3542 ATCCTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTT 3601 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||||||| | || ||||| || || |||||| | || || || || || || Sbjct 3602 ATCTTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACCTCTAATGTGAT 3661 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| || || |||||||| Sbjct 3662 TGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697 Score = 100 bits (110), Expect = 6e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || |||||||| || ||||| || || || || | Sbjct 3982 TACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGG 4041 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || ||||| || ||||||||||| | | ||||| || |||| Sbjct 4042 AAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAG 4101 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || |||||||| |||||||| | || ||||| || || || || || ||| | Sbjct 4102 GGATACCCTCCTTATCCTGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGATTCAA 4161 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786 | || | || || |||||||| || Sbjct 4162 CCTCAAGGGTGATGGTCTTGCCGGT 4186 >seq9962 Length=55051 Score = 113 bits (124), Expect = 9e-20 Identities = 130/174 (75%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || || || | ||||||||| || ||||||||||| || || | | ||||| ||||| Sbjct 10934 TCCTTTTGGAAATTATAATCTGAAAGAATTCTACCATCCTCCA-ATACTTTCCTGCAAAT 10992 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || | || |||||| || || || || ||||||| ||||| ||||||| | ||||| Sbjct 10993 ATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGATCTTTGTCTGGACATTA 11052 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 ||||| ||||| | ||| |||||||| || || ||||| || ||||| ||| Sbjct 11053 TCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAGGTC 11106 >seq10174 Length=26070 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || || |||||||| |||||| | | || ||||| ||||| ||||| || ||||| Sbjct 24505 TTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATC 24564 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | | |||||| || || || ||||| ||||| ||||||||||| | || ||||| || Sbjct 24565 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 24624 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 || || || | ||| || || | || || ||||| || ||||| ||||| || || Sbjct 24625 ATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 24683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981679049332403