Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq10763 197 3e-45 seq10338 95.1 3e-14 seq1304 87.8 4e-12 >seq10763 Length=10051 Score = 197 bits (218), Expect = 3e-45 Identities = 531/800 (66%), Gaps = 13/800 (2%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || || || ||||| |||||||| | | || | || || || |||| | | | Sbjct 4339 TACTTCGGATTCAAGACTCTTGAGAGATCATACCTCCTCCGCCTCGATGGAAAAGTTGCT 4398 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAA- 110422 |||||||| ||||| ||| || | |||||||| |||||||||| || ||||||| | Sbjct 4399 GAACGTCCACAACAAATGATTATGCGTGTTGCCGTTGGTATTCACGGTGATGATATCGAG 4458 Query 110423 AGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTAC 110482 ||| | |||||| || | || | || || | || || ||| |||| || Sbjct 4459 AGC-GCCATTGAAACCTACAACTTAATGTCCAACAAATACTTTACACACGCTTCTCCAAC 4517 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAA 110542 || || ||| || || || ||| | |||| ||||| || | | || || Sbjct 4518 ACTCTTCTCCGCGGGTACACCACAAGCCCAACTTTCTTCATGCTTCCTCATTGACATGAA 4577 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAA 110601 || ||| |||||| || ||||||||| || || |||| ||| | |||||||| | Sbjct 4578 GGAGGATAGTATTGATGGAATTTATGATACT-TTGAAGATTTGTGCCATGATTTCTAAGA 4636 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAA 110661 | ||||||| |||||| | || | || ||||| | | || ||| | || || Sbjct 4637 ATGCTGGAGGTATTGGTCTCAACATCCACAGAATTCGTGCTACTGGTGCATACATTGCTG 4696 Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 | || || ||| | || | ||||| ||| | |||| |||||| | || || | Sbjct 4697 GCACAAATGGAAATTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAATACCGCTA 4756 Query 110722 AATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTT 110778 |||||| ||||||||||| ||| | ||| |||| || ||||| || ||||| | Sbjct 4757 GATATGTCGATCAAGGTGGTAACAAGCGCCCTGGTGCATTCGCCATCTACCTTGAACCAT 4816 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 ||||| | ||| | ||||| || || || || || || ||||| ||| || ||| Sbjct 4817 GGCATGCGGATGTCTTTGAGTTTTTGGATCTCCGAAAGAATCATGGAAAGGAGGAAGTTC 4876 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 ||||||| || | |||||||| | |||||| ||||| | |||||||| |||||| || Sbjct 4877 GAGCACGCGACCTCTTTTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAA 4936 Query 110899 AAAATGGCATGTGGTCTCTTATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATGTATAT 110957 | || || ||| | || ||||| || || || | |||||| | ||||||| ||| Sbjct 4937 AGAACGGAGATTGGACACTCATGTG-CCCCAACGAATGTCCTGGCTTGGCTGATGTCTAT 4995 Query 110958 GGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA-ACA 111016 || | |||||||||| ||||| || || || ||| |||| || || || || Sbjct 4996 GGTGATGAGTTTGAAGCTCTTTATGAGGGTTACGAGAAACAAGGTAAAGGCCGTAAGACT 5055 Query 111017 AATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTC 111075 | || | |||||| | ||||||| ||||| || |||| ||| || |||| | Sbjct 5056 A--TCAAGGCTCAAAAGCTTTGGTATTCTATCCTCGAGGCACAGACTGAGACAGGAAACC 5113 Query 111076 CTTATATTTTGTATAAAGAT 111095 ||| || | || |||||| Sbjct 5114 CTTTCATGCTTTACAAAGAT 5133 >seq10338 Length=29807 Score = 95.1 bits (104), Expect = 3e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 131795 ATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCT 131854 ||||| ||||| || || |||||| ||| |||||| ||||| | ||| ||| || Sbjct 12930 ATTAAGAAGAAGGCCGATTGGGCTGTTAGATGGATCCAAGACAAAGAATCTACATTTGCT 12989 Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 | | || || || || ||| |||||||||||| ||||| ||| | ||| || Sbjct 12990 CAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGGTTCATTCGCCTCT 13049 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 ||||| ||||| ||||||||||| |||||| | || || | || ||||| | ||||| Sbjct 13050 ATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTCCAACGAGCTCATC 13109 Query 131975 TC 131976 || Sbjct 13110 TC 13111 >seq1304 Length=7141 Score = 87.8 bits (96), Expect = 4e-12 Identities = 166/240 (69%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 304899 TTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT-CAAAGATCTGGC 304957 ||||||||| |||||||| || |||||||| ||||| ||| || | ||| || Sbjct 4620 TTGCAACATATATGGATAACGATATTGCTGGTCAGCCACAGGC-TCTGCAGAAATCAGGT 4562 Query 304958 AGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAAT 305017 ||||| ||||| ||| | || | || || || ||||| ||| |||| || ||| Sbjct 4561 AGACCAGTAAAGTCCATTCGTGCTCGTCTAAAGGGAAAGGAGGGACGTCTTCGTGGAAAT 4502 Query 305018 CTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCTCAAATT 305077 | |||||||||||||| ||||| ||| | | ||| ||||| |||| || | || Sbjct 4501 TTGATGGGAAAACGTGTCGATTTCTCTGCGCGTACTGTCATCACTGGTGATCCTAATCTT 4442 Query 305078 AGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTTTAAAACTAACATTTCCAGAGA 305135 |||| ||||| | || |||||| ||| || ||| || || ||||| || |||| Sbjct 4441 TCTCTTGATGAAGTCGGTGTTCCA--CGAAGTATCGCTAGAATTCTCACATTCCCCGAGA 4384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186633718478697