Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 197 3e-45
seq10338 95.1 3e-14
seq1304 87.8 4e-12
>seq10763
Length=10051
Score = 197 bits (218), Expect = 3e-45
Identities = 531/800 (66%), Gaps = 13/800 (2%)
Strand=Plus/Plus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
|| || || ||||| |||||||| | | || | || || || |||| | | |
Sbjct 4339 TACTTCGGATTCAAGACTCTTGAGAGATCATACCTCCTCCGCCTCGATGGAAAAGTTGCT 4398
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAA- 110422
|||||||| ||||| ||| || | |||||||| |||||||||| || ||||||| |
Sbjct 4399 GAACGTCCACAACAAATGATTATGCGTGTTGCCGTTGGTATTCACGGTGATGATATCGAG 4458
Query 110423 AGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTAC 110482
||| | |||||| || | || | || || | || || ||| |||| ||
Sbjct 4459 AGC-GCCATTGAAACCTACAACTTAATGTCCAACAAATACTTTACACACGCTTCTCCAAC 4517
Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAA 110542
|| || ||| || || || ||| | |||| ||||| || | | || ||
Sbjct 4518 ACTCTTCTCCGCGGGTACACCACAAGCCCAACTTTCTTCATGCTTCCTCATTGACATGAA 4577
Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAA 110601
|| ||| |||||| || ||||||||| || || |||| ||| | |||||||| |
Sbjct 4578 GGAGGATAGTATTGATGGAATTTATGATACT-TTGAAGATTTGTGCCATGATTTCTAAGA 4636
Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAA 110661
| ||||||| |||||| | || | || ||||| | | || ||| | || ||
Sbjct 4637 ATGCTGGAGGTATTGGTCTCAACATCCACAGAATTCGTGCTACTGGTGCATACATTGCTG 4696
Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721
| || || ||| | || | ||||| ||| | |||| |||||| | || || |
Sbjct 4697 GCACAAATGGAAATTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAATACCGCTA 4756
Query 110722 AATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTT 110778
|||||| ||||||||||| ||| | ||| |||| || ||||| || ||||| |
Sbjct 4757 GATATGTCGATCAAGGTGGTAACAAGCGCCCTGGTGCATTCGCCATCTACCTTGAACCAT 4816
Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838
||||| | ||| | ||||| || || || || || || ||||| ||| || |||
Sbjct 4817 GGCATGCGGATGTCTTTGAGTTTTTGGATCTCCGAAAGAATCATGGAAAGGAGGAAGTTC 4876
Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898
||||||| || | |||||||| | |||||| ||||| | |||||||| |||||| ||
Sbjct 4877 GAGCACGCGACCTCTTTTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAA 4936
Query 110899 AAAATGGCATGTGGTCTCTTATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATGTATAT 110957
| || || ||| | || ||||| || || || | |||||| | ||||||| |||
Sbjct 4937 AGAACGGAGATTGGACACTCATGTG-CCCCAACGAATGTCCTGGCTTGGCTGATGTCTAT 4995
Query 110958 GGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA-ACA 111016
|| | |||||||||| ||||| || || || ||| |||| || || || ||
Sbjct 4996 GGTGATGAGTTTGAAGCTCTTTATGAGGGTTACGAGAAACAAGGTAAAGGCCGTAAGACT 5055
Query 111017 AATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTC 111075
| || | |||||| | ||||||| ||||| || |||| ||| || |||| |
Sbjct 5056 A--TCAAGGCTCAAAAGCTTTGGTATTCTATCCTCGAGGCACAGACTGAGACAGGAAACC 5113
Query 111076 CTTATATTTTGTATAAAGAT 111095
||| || | || ||||||
Sbjct 5114 CTTTCATGCTTTACAAAGAT 5133
>seq10338
Length=29807
Score = 95.1 bits (104), Expect = 3e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 131795 ATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCT 131854
||||| ||||| || || |||||| ||| |||||| ||||| | ||| ||| ||
Sbjct 12930 ATTAAGAAGAAGGCCGATTGGGCTGTTAGATGGATCCAAGACAAAGAATCTACATTTGCT 12989
Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914
| | || || || || ||| |||||||||||| ||||| ||| | ||| ||
Sbjct 12990 CAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGGTTCATTCGCCTCT 13049
Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974
||||| ||||| ||||||||||| |||||| | || || | || ||||| | |||||
Sbjct 13050 ATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTCCAACGAGCTCATC 13109
Query 131975 TC 131976
||
Sbjct 13110 TC 13111
>seq1304
Length=7141
Score = 87.8 bits (96), Expect = 4e-12
Identities = 166/240 (69%), Gaps = 6/240 (3%)
Strand=Plus/Minus
Query 304899 TTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT-CAAAGATCTGGC 304957
||||||||| |||||||| || |||||||| ||||| ||| || | ||| ||
Sbjct 4620 TTGCAACATATATGGATAACGATATTGCTGGTCAGCCACAGGC-TCTGCAGAAATCAGGT 4562
Query 304958 AGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAAT 305017
||||| ||||| ||| | || | || || || ||||| ||| |||| || |||
Sbjct 4561 AGACCAGTAAAGTCCATTCGTGCTCGTCTAAAGGGAAAGGAGGGACGTCTTCGTGGAAAT 4502
Query 305018 CTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCTCAAATT 305077
| |||||||||||||| ||||| ||| | | ||| ||||| |||| || | ||
Sbjct 4501 TTGATGGGAAAACGTGTCGATTTCTCTGCGCGTACTGTCATCACTGGTGATCCTAATCTT 4442
Query 305078 AGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTTTAAAACTAACATTTCCAGAGA 305135
|||| ||||| | || |||||| ||| || ||| || || ||||| || ||||
Sbjct 4441 TCTCTTGATGAAGTCGGTGTTCCA--CGAAGTATCGCTAGAATTCTCACATTCCCCGAGA 4384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186633718478697
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |