Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq10338 102 1e-15
seq5810 91.5 2e-12
>seq10338
Length=29807
Score = 102 bits (112), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929
||||| ||||| | ||| || |||||||||| | || |||||||| ||||| ||
Sbjct 12632 GACGATGAGCGTTACTTCGTCTCTCACGTCCTCG-CATTCTTCGCCGCATCTGATGGAAT 12690
Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989
|| |||||||| | || || || | |||||||| | || || ||||| |
Sbjct 12691 TGTCAATGAGAACCTTGTCGAACGTTTCAGTGGTGAGGTCCAGATCCCTGAAGCACGATG 12750
Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049
|| ||||| ||||||||| || || ||||| ||||| ||||| ||||| || || ||
Sbjct 12751 CTTCTACGGTTTCCAGATCATGATGGAGAACATTCACTCGGAAACATACTCTCTTCTCAT 12810
Query 1456050 CGACACCTACGTCAAGGA 1456067
||| || ||| |||||||
Sbjct 12811 CGATACATACATCAAGGA 12828
>seq5810
Length=707
Score = 91.5 bits (100), Expect = 2e-12
Identities = 102/133 (77%), Gaps = 4/133 (3%)
Strand=Plus/Plus
Query 262095 TCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGG 262154
|||||| |||||| ||| |||||| | |||||| || | |||| |||| |||||||||
Sbjct 477 TCTGGTATGCCATTCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCTACAAGG 536
Query 262155 ACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAACCT 262212
| ||| |||| || || |||||| |||||||||| || | || ||| | |||||
Sbjct 537 ATGCCTGCAACAGGAAGAGTAACCAGAAGAACCTGGGTACTATTCG-CAGCT-CTAACCT 594
Query 262213 GTGCACCGAGATC 262225
|||||| ||||||
Sbjct 595 GTGCACTGAGATC 607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7176675286703874
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |