Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq10338 102 1e-15 seq5810 91.5 2e-12 >seq10338 Length=29807 Score = 102 bits (112), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 ||||| ||||| | ||| || |||||||||| | || |||||||| ||||| || Sbjct 12632 GACGATGAGCGTTACTTCGTCTCTCACGTCCTCG-CATTCTTCGCCGCATCTGATGGAAT 12690 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 || |||||||| | || || || | |||||||| | || || ||||| | Sbjct 12691 TGTCAATGAGAACCTTGTCGAACGTTTCAGTGGTGAGGTCCAGATCCCTGAAGCACGATG 12750 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||| ||||||||| || || ||||| ||||| ||||| ||||| || || || Sbjct 12751 CTTCTACGGTTTCCAGATCATGATGGAGAACATTCACTCGGAAACATACTCTCTTCTCAT 12810 Query 1456050 CGACACCTACGTCAAGGA 1456067 ||| || ||| ||||||| Sbjct 12811 CGATACATACATCAAGGA 12828 >seq5810 Length=707 Score = 91.5 bits (100), Expect = 2e-12 Identities = 102/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 262095 TCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGG 262154 |||||| |||||| ||| |||||| | |||||| || | |||| |||| ||||||||| Sbjct 477 TCTGGTATGCCATTCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCTACAAGG 536 Query 262155 ACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAACCT 262212 | ||| |||| || || |||||| |||||||||| || | || ||| | ||||| Sbjct 537 ATGCCTGCAACAGGAAGAGTAACCAGAAGAACCTGGGTACTATTCG-CAGCT-CTAACCT 594 Query 262213 GTGCACCGAGATC 262225 |||||| |||||| Sbjct 595 GTGCACTGAGATC 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176675286703874