Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq655 125 6e-24 seq10174 87.8 2e-12 >seq655 Length=7676 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||||||| || ||||||||||| ||||| ||||| | Sbjct 3243 CCACCACGGAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAA 3302 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| |||| |||| ||||| || ||||| ||||| || || || || | ||| Sbjct 3303 AGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGA 3362 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| ||||||| ||| | | | | || || ||||||||| Sbjct 3363 ATACCTTCCTTGTCTTGGATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCACT 3422 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||| ||| || || || || |||||||| || ||||| || ||||||| Sbjct 3423 TCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATTC 3471 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | ||||||||||| || |||||||| ||||||||||||| Sbjct 3469 TTCCACCACGAAGACGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGG 3528 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||||| || | || |||| ||||||||| || || || | || ||||| || | | Sbjct 3529 ATAAGGTGCGGCCATCCTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTG 3588 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | || |||||| || ||||| ||||| | | | | || || ||| || | Sbjct 3589 GGATGCCCTCCTTATCTTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGA 3648 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| | ||||| || || || || | || || || || |||||||| Sbjct 3649 CCTCTAATGTGATTGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697 >seq10174 Length=26070 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 ||||||| ||||| ||||||| | || || | || || || ||||| || || || | Sbjct 24503 CCTTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGA 24562 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| || || ||||||| |||| | ||||||||| ||||| ||| | | | Sbjct 24563 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGT 24622 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | |||||| ||||| ||||| | ||||| || ||||||||||| || || || | Sbjct 24623 CGATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGA 24682 Query 35727 A 35727 | Sbjct 24683 A 24683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450727237547160