Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 421 9e-113
>seq10763
Length=10051
Score = 421 bits (466), Expect = 9e-113
Identities = 1339/2063 (65%), Gaps = 45/2063 (2%)
Strand=Plus/Minus
Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433
|| || ||||| |||| || || | | ||||| ||||||||||| || || || |||
Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102
Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493
|| | ||||||| ||||||||| || | ||| | || || ||
Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 6042
Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553
||||| |||||||||||| |||||| |||||||| || | ||||| ||||||| | |
Sbjct 6041 TGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACA 5982
Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613
|| | ||||| |||||||||| ||||| | | ||| || || |||||| |
Sbjct 5981 ATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAATG 5922
Query 68614 CTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670
| | ||||||||||||| |||||||| | || || |||||| || | |||| |
Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862
Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730
|| | | | || ||| | |||| || || ||||| | ||| || || ||
Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802
Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790
| ||||| | || | |||||| || || ||||| || | | ||||||| ||
Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742
Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850
|||||||||| || |||||||||||||| || || | |||||||| | | ||||
Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACCA 5682
Query 68851 TGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTC 68910
||| |||| | || ||| | ||||||||||||||| | || |||| |
Sbjct 5681 TGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACACCC 5622
Query 68911 CAAAGATCGTATTGTAGAATTCCGTT----ACTTGCATATGATCCATTATATGTTTCATA 68966
|| | ||| ||||| || || || ||| | ||||| | ||||| || ||
Sbjct 5621 CACATATCATATTGAAGCTCACCCTTGGAGACTGGA----GATCCTTCATATGACTCGTA 5566
Query 68967 AGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTC 69026
|| ||| | | |||| | | | || || ||||||| || || || ||
Sbjct 5565 TGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAAGCACCGTGGTAGATGGTCTC 5506
Query 69027 GAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAAT 69086
|| || | | ||||||| | ||||| | ||||||||| || | | | |
Sbjct 5505 AAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGGTAAACGGAGAGCCAA 5446
Query 69087 AAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACT 69146
|| ||||| || | || ||||| |||| | | ||||||| ||| | ||| ||
Sbjct 5445 GAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGCTTCT 5386
Query 69147 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTAC 69206
| |||||| | ||||| ||||| ||||| ||||| || || | |||| ||| ||
Sbjct 5385 TCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGACAAC 5326
Query 69207 TACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTATAACAA 69259
|||| ||| || || | || || | |||||| | ||| |||| | | ||||
Sbjct 5325 AACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGT-TGACAA 5267
Query 69260 ACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA---T 69316
| | || || | ||| || | |||||| || ||||||| || |||| |
Sbjct 5266 AGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGG---TGCAGAGT 5210
Query 69317 ATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTAC 69376
||| | || || || || | || | ||| || || ||||| | ||||| |
Sbjct 5209 ATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTGC 5150
Query 69377 TCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 69436
|||||||||| || || || |||||||| || || || | || || ||| |||| | |
Sbjct 5149 TCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCCT 5090
Query 69437 CGATAATAGATTTCCAAAC-----GACCCTAGCATTTATTACGGTCTTGTAACGCTTCTC 69491
||| ||||| | ||||| || ||| | | |||||| ||| || ||| |
Sbjct 5089 CGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTTT--AC-CTTGT- 5034
Query 69492 TTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGG 69551
|| || || ||| || ||| || ||||| || | |||||| |||| |||||
Sbjct 5033 -TTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGG 4975
Query 69552 ACATTCATTTGGACACATCAATGACCACACATCATCATCCTT---AACTCGTTTCATAAA 69608
|||||| || || ||||| | || ||| ||| | | ||| ||| || ||||| ||
Sbjct 4974 ACATTCGTTGGGGCACATGAGTGTCCA---ATCTCCGTTCTTTTCAACACGCTTCATGAA 4918
Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668
||||| |||||||| || || |||||| || | | || | ||| || |||||
Sbjct 4917 GAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATG 4858
Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728
||| ||| ||||| | |||||| | | ||| | |||||||||||| || || || ||
Sbjct 4857 ATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGC 4798
Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788
| | || || || || || || || ||||| | ||||| || || || || | ||
Sbjct 4797 GAATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAAC 4738
Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCT 69848
|| ||||| |||| ||||| ||||| || |||||||| |||| ||| || || |
Sbjct 4737 TCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGT 4678
Query 69849 TGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 69908
|| ||||| | || ||||| || ||||| || | ||||| || | |||||
Sbjct 4677 AGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACA 4618
Query 69909 ACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACA 69968
| ||||| || ||||| || || || || ||||| || |||||| || || || ||
Sbjct 4617 AATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCA 4558
Query 69969 GCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAA 70028
||| | ||| ||| || ||||| || | ||| ||||| ||||| || ||
Sbjct 4557 TGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAA 4498
Query 70029 CCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAA 70087
|||| | || | | ||||| |||||||| || || ||||| ||| | ||||
Sbjct 4497 GTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGAA 4439
Query 70088 TTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTT 70147
| || | || |||||||| | ||| || || || ||||| | ||| || |
Sbjct 4438 TACCAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGGC 4379
Query 70148 TCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTT 70207
| ||||||||| | || ||||| || || || || || | ||| ||||||| |
Sbjct 4378 GGAGGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGAT 4319
Query 70208 CGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACAGTAG 70267
|||||| ||| |||| || |||| ||| || | | |||| | || |||| |
Sbjct 4318 CGTAAACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTCC 4260
Query 70268 GTG-AGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTCC 70326
|| || || |||||| | |||||||||| | || |||| | ||| ||
Sbjct 4259 TTGCTAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACTG 4200
Query 70327 ATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCT 70386
|| |||| ||| |||| || |||| |||||| | ||| || | || || | ||
Sbjct 4199 ATGACATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGCA 4140
Query 70387 GCTAGAATAGCATAGTCAGGATG 70409
|||| || ||||| || |||||
Sbjct 4139 GCTAAGATGGCATAATCGGGATG 4117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686807678438280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |