Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10763 421 9e-113 >seq10763 Length=10051 Score = 421 bits (466), Expect = 9e-113 Identities = 1339/2063 (65%), Gaps = 45/2063 (2%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || || ||||| |||| || || | | ||||| ||||||||||| || || || ||| Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | ||||||| ||||||||| || | ||| | || || || Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 6042 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 ||||| |||||||||||| |||||| |||||||| || | ||||| ||||||| | | Sbjct 6041 TGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACA 5982 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | ||||| |||||||||| ||||| | | ||| || || |||||| | Sbjct 5981 ATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAATG 5922 Query 68614 CTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | ||||||||||||| |||||||| | || || |||||| || | |||| | Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || | | | || ||| | |||| || || ||||| | ||| || || || Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | ||||| | || | |||||| || || ||||| || | | ||||||| || Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742 Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850 |||||||||| || |||||||||||||| || || | |||||||| | | |||| Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACCA 5682 Query 68851 TGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTC 68910 ||| |||| | || ||| | ||||||||||||||| | || |||| | Sbjct 5681 TGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACACCC 5622 Query 68911 CAAAGATCGTATTGTAGAATTCCGTT----ACTTGCATATGATCCATTATATGTTTCATA 68966 || | ||| ||||| || || || ||| | ||||| | ||||| || || Sbjct 5621 CACATATCATATTGAAGCTCACCCTTGGAGACTGGA----GATCCTTCATATGACTCGTA 5566 Query 68967 AGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTC 69026 || ||| | | |||| | | | || || ||||||| || || || || Sbjct 5565 TGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAAGCACCGTGGTAGATGGTCTC 5506 Query 69027 GAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAAT 69086 || || | | ||||||| | ||||| | ||||||||| || | | | | Sbjct 5505 AAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGGTAAACGGAGAGCCAA 5446 Query 69087 AAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACT 69146 || ||||| || | || ||||| |||| | | ||||||| ||| | ||| || Sbjct 5445 GAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGCTTCT 5386 Query 69147 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTAC 69206 | |||||| | ||||| ||||| ||||| ||||| || || | |||| ||| || Sbjct 5385 TCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGACAAC 5326 Query 69207 TACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA-------TCGTCCATCTATAACAA 69259 |||| ||| || || | || || | |||||| | ||| |||| | | |||| Sbjct 5325 AACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGT-TGACAA 5267 Query 69260 ACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA---T 69316 | | || || | ||| || | |||||| || ||||||| || |||| | Sbjct 5266 AGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGG---TGCAGAGT 5210 Query 69317 ATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTAC 69376 ||| | || || || || | || | ||| || || ||||| | ||||| | Sbjct 5209 ATTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTGC 5150 Query 69377 TCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 69436 |||||||||| || || || |||||||| || || || | || || ||| |||| | | Sbjct 5149 TCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCCT 5090 Query 69437 CGATAATAGATTTCCAAAC-----GACCCTAGCATTTATTACGGTCTTGTAACGCTTCTC 69491 ||| ||||| | ||||| || ||| | | |||||| ||| || ||| | Sbjct 5089 CGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTTT--AC-CTTGT- 5034 Query 69492 TTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGG 69551 || || || ||| || ||| || ||||| || | |||||| |||| ||||| Sbjct 5033 -TTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGG 4975 Query 69552 ACATTCATTTGGACACATCAATGACCACACATCATCATCCTT---AACTCGTTTCATAAA 69608 |||||| || || ||||| | || ||| ||| | | ||| ||| || ||||| || Sbjct 4974 ACATTCGTTGGGGCACATGAGTGTCCA---ATCTCCGTTCTTTTCAACACGCTTCATGAA 4918 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 ||||| |||||||| || || |||||| || | | || | ||| || ||||| Sbjct 4917 GAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATG 4858 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 ||| ||| ||||| | |||||| | | ||| | |||||||||||| || || || || Sbjct 4857 ATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGC 4798 Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 | | || || || || || || || ||||| | ||||| || || || || | || Sbjct 4797 GAATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAAC 4738 Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCT 69848 || ||||| |||| ||||| ||||| || |||||||| |||| ||| || || | Sbjct 4737 TCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGT 4678 Query 69849 TGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 69908 || ||||| | || ||||| || ||||| || | ||||| || | ||||| Sbjct 4677 AGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACA 4618 Query 69909 ACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACA 69968 | ||||| || ||||| || || || || ||||| || |||||| || || || || Sbjct 4617 AATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCA 4558 Query 69969 GCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAA 70028 ||| | ||| ||| || ||||| || | ||| ||||| ||||| || || Sbjct 4557 TGAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAA 4498 Query 70029 CCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAA 70087 |||| | || | | ||||| |||||||| || || ||||| ||| | |||| Sbjct 4497 GTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGAA 4439 Query 70088 TTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTT 70147 | || | || |||||||| | ||| || || || ||||| | ||| || | Sbjct 4438 TACCAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGGC 4379 Query 70148 TCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTT 70207 | ||||||||| | || ||||| || || || || || | ||| ||||||| | Sbjct 4378 GGAGGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGAT 4319 Query 70208 CGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACAGTAG 70267 |||||| ||| |||| || |||| ||| || | | |||| | || |||| | Sbjct 4318 CGTAAACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTCC 4260 Query 70268 GTG-AGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTCC 70326 || || || |||||| | |||||||||| | || |||| | ||| || Sbjct 4259 TTGCTAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACTG 4200 Query 70327 ATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCT 70386 || |||| ||| |||| || |||| |||||| | ||| || | || || | || Sbjct 4199 ATGACATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGCA 4140 Query 70387 GCTAGAATAGCATAGTCAGGATG 70409 |||| || ||||| || ||||| Sbjct 4139 GCTAAGATGGCATAATCGGGATG 4117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686807678438280