Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10173 86.0 5e-12 >seq10173 Length=50247 Score = 86.0 bits (94), Expect = 5e-12 Identities = 383/604 (63%), Gaps = 17/604 (3%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| |||||| || ||| ||| || || || || ||||| |||| ||| ||| || Sbjct 38307 ATTGGTGGATTGGATACAGAATTTAGTGCTATATTCCGAAGAGCTTTTGCGTCCCGTATT 38366 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 || || | | | ||| || |||| || | || || || || | |||| | Sbjct 38367 TTCCCTCCTGGATTGATTGAAAAATTAGGTATCCAGCACGTGAAGGGTATTCTACTTTTT 38426 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA---CA 19419 || || || || ||||||||| | ||||| | || || ||||| | | | | Sbjct 38427 GGACCTCCTGGAACGGGAAAAACACTTATTGCACGTCAAATTGGTAAAATGTTAAACTCG 38486 Query 19420 AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 | | | ||| ||| | | ||||| || ||| | |||| || || || |||||||| Sbjct 38487 AGAGAGCCT---AAAGTCATTAATGGACCGGAAGTGCTAAACAAGTACGTCGGTCAATCT 38543 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGC 19539 ||||| || | ||| ||||| || || || || ||||| | || | |||| | Sbjct 38544 GAAGAGAACATTCGAAAGTTGTTCGCCGATGCAGAGAAAGAATACAAG-GAGAAGGGAGA 38602 Query 19540 A-AAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598 ||||| | | || || || || | || ||| | || || | || ||||| ||||| Sbjct 38603 TGAAAGTGGTCTTCATATCATCATTTTCGACGAACTCGATGCCGTGTGCAAGCAGAGAGG 38662 Query 19599 ---------TTCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAA 19649 | ||||| || || || |||| ||||||||||| | || || || Sbjct 38663 AAGCGGAGGTGGTGGTGGAACAGGTGTTGGCGACAGCGTTGTCAATCAGTTGCTATCTAA 38722 Query 19650 ATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGA 19709 | | || ||||| | || || ||||| ||| | |||| || ||||| ||| | |||| Sbjct 38723 ACTTGATGGTGTGGATCAGCTCAATAACATTCTCCTTATCGGGATGACAAATCGTATGGA 38782 Query 19710 ATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTT 19769 | || || || || | ||||| || || ||||| | | || || || || Sbjct 38783 TATGATTGATGATGCTTTGCTTCGACCTGGGCGTCTGGAAGTCCATATGGAGATCTCTTT 38842 Query 19770 ACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAA 19829 || |||||| ||| | | |||| | || || || || || | |||||| | || Sbjct 38843 GCCAGATGAAGCTGGCAGAGCACAAATCCTCAAGATCCACACGTCCAAAATGCGAGACAA 38902 Query 19830 TAAC 19833 |||| Sbjct 38903 TAAC 38906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397398952270885