Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq10173 86.0 5e-12
>seq10173
Length=50247
Score = 86.0 bits (94), Expect = 5e-12
Identities = 383/604 (63%), Gaps = 17/604 (3%)
Strand=Plus/Plus
Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302
||||| |||||| || ||| ||| || || || || ||||| |||| ||| ||| ||
Sbjct 38307 ATTGGTGGATTGGATACAGAATTTAGTGCTATATTCCGAAGAGCTTTTGCGTCCCGTATT 38366
Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362
|| || | | | ||| || |||| || | || || || || | |||| |
Sbjct 38367 TTCCCTCCTGGATTGATTGAAAAATTAGGTATCCAGCACGTGAAGGGTATTCTACTTTTT 38426
Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA---CA 19419
|| || || || ||||||||| | ||||| | || || ||||| | | | |
Sbjct 38427 GGACCTCCTGGAACGGGAAAAACACTTATTGCACGTCAAATTGGTAAAATGTTAAACTCG 38486
Query 19420 AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479
| | | ||| ||| | | ||||| || ||| | |||| || || || ||||||||
Sbjct 38487 AGAGAGCCT---AAAGTCATTAATGGACCGGAAGTGCTAAACAAGTACGTCGGTCAATCT 38543
Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGC 19539
||||| || | ||| ||||| || || || || ||||| | || | |||| |
Sbjct 38544 GAAGAGAACATTCGAAAGTTGTTCGCCGATGCAGAGAAAGAATACAAG-GAGAAGGGAGA 38602
Query 19540 A-AAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598
||||| | | || || || || | || ||| | || || | || ||||| |||||
Sbjct 38603 TGAAAGTGGTCTTCATATCATCATTTTCGACGAACTCGATGCCGTGTGCAAGCAGAGAGG 38662
Query 19599 ---------TTCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAA 19649
| ||||| || || || |||| ||||||||||| | || || ||
Sbjct 38663 AAGCGGAGGTGGTGGTGGAACAGGTGTTGGCGACAGCGTTGTCAATCAGTTGCTATCTAA 38722
Query 19650 ATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGA 19709
| | || ||||| | || || ||||| ||| | |||| || ||||| ||| | ||||
Sbjct 38723 ACTTGATGGTGTGGATCAGCTCAATAACATTCTCCTTATCGGGATGACAAATCGTATGGA 38782
Query 19710 ATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTT 19769
| || || || || | ||||| || || ||||| | | || || || ||
Sbjct 38783 TATGATTGATGATGCTTTGCTTCGACCTGGGCGTCTGGAAGTCCATATGGAGATCTCTTT 38842
Query 19770 ACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAA 19829
|| |||||| ||| | | |||| | || || || || || | |||||| | ||
Sbjct 38843 GCCAGATGAAGCTGGCAGAGCACAAATCCTCAAGATCCACACGTCCAAAATGCGAGACAA 38902
Query 19830 TAAC 19833
||||
Sbjct 38903 TAAC 38906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397398952270885
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |