Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 123 2e-23
seq655 87.8 2e-12
>seq10763
Length=10051
Score = 123 bits (136), Expect = 2e-23
Identities = 351/533 (66%), Gaps = 15/533 (3%)
Strand=Plus/Minus
Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662
||||||||| |||| ||||| || | ||| | ||||||| |||||| |||||||| ||
Sbjct 4976 GGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAG 4917
Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTT--TTCTCTTCTGTACCCA 131720
| ||| || | ||| | || || || || || | ||| ||| || || | |||
Sbjct 4916 AGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTC-CTCCTTT--CCA 4860
Query 131721 TAAtttttttCAA-ATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACT 131779
| ||| ||| | || ||||| || || | ||||||||||| ||||| | || |
Sbjct 4859 TGATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATG 4800
Query 131780 GCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTTGTAT 131836
|| | ||| || |||||| ||| ||||||| |||| | | | | |||||| |
Sbjct 4799 GCGAATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAA 4740
Query 131837 ACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCA 131896
|| || | ||| || | | |||||| | |||||||| |||| |||||| |||
Sbjct 4739 ACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCA 4680
Query 131897 TTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCG 131956
| || | ||| |||| | |||||| ||||||||||| | | ||||| || | ||
Sbjct 4679 GTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCA 4620
Query 131957 CATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAG 132016
|| | | | ||| | ||| || || || | || ||| | ||||| | | |||
Sbjct 4619 CAAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAG 4560
Query 132017 CAAGAGGACAACTGTTGG---TGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGT 132073
|| || || | ||||| || ||| || || || || | ||| || ||||||
Sbjct 4559 CATGAAGAAA---GTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGT 4503
Query 132074 GTAAAAAGTTTTTTGGCCATGCACCGATACGATTGTATAGCGGACTCGATATC 132126
||||| ||| |||| ||| | || | || || ||| |||||||||
Sbjct 4502 GTAAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATC 4450
>seq655
Length=7676
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097
|||||||||||| || || || ||||| || ||||| ||| | | |||| | || ||
Sbjct 3488 TACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCCATCCTC 3547
Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157
| ||| ||||| ||| |||||||||| || ||||| || || | ||||| |||||
Sbjct 3548 CAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTTATCTTG 3607
Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217
||||| | |||| | || | || || | | || || |||| || || | ||
Sbjct 3608 AATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACCTCTAATGTGATTGTCTT 3667
Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || || || || ||||| ||||||
Sbjct 3668 TCCAGTAAGGGTCTTGACGAAGATCTGCATA 3698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424873408236024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |