Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq10763 123 2e-23 seq655 87.8 2e-12 >seq10763 Length=10051 Score = 123 bits (136), Expect = 2e-23 Identities = 351/533 (66%), Gaps = 15/533 (3%) Strand=Plus/Minus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 ||||||||| |||| ||||| || | ||| | ||||||| |||||| |||||||| || Sbjct 4976 GGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAG 4917 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTT--TTCTCTTCTGTACCCA 131720 | ||| || | ||| | || || || || || | ||| ||| || || | ||| Sbjct 4916 AGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTC-CTCCTTT--CCA 4860 Query 131721 TAAtttttttCAA-ATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACT 131779 | ||| ||| | || ||||| || || | ||||||||||| ||||| | || | Sbjct 4859 TGATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATG 4800 Query 131780 GCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTTGTAT 131836 || | ||| || |||||| ||| ||||||| |||| | | | | |||||| | Sbjct 4799 GCGAATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAA 4740 Query 131837 ACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCA 131896 || || | ||| || | | |||||| | |||||||| |||| |||||| ||| Sbjct 4739 ACTCGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCA 4680 Query 131897 TTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCG 131956 | || | ||| |||| | |||||| ||||||||||| | | ||||| || | || Sbjct 4679 GTAGCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCA 4620 Query 131957 CATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAG 132016 || | | | ||| | ||| || || || | || ||| | ||||| | | ||| Sbjct 4619 CAAATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAG 4560 Query 132017 CAAGAGGACAACTGTTGG---TGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGT 132073 || || || | ||||| || ||| || || || || | ||| || |||||| Sbjct 4559 CATGAAGAAA---GTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGT 4503 Query 132074 GTAAAAAGTTTTTTGGCCATGCACCGATACGATTGTATAGCGGACTCGATATC 132126 ||||| ||| |||| ||| | || | || || ||| ||||||||| Sbjct 4502 GTAAAGTATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATC 4450 >seq655 Length=7676 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 |||||||||||| || || || ||||| || ||||| ||| | | |||| | || || Sbjct 3488 TACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCCATCCTC 3547 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||| ||||| ||| |||||||||| || ||||| || || | ||||| ||||| Sbjct 3548 CAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTTATCTTG 3607 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| | |||| | || | || || | | || || |||| || || | || Sbjct 3608 AATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACCTCTAATGTGATTGTCTT 3667 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || ||||| |||||| Sbjct 3668 TCCAGTAAGGGTCTTGACGAAGATCTGCATA 3698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424873408236024